Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20platani_20[genbank_20GCA_5F000978885.1_202015-04-23]
1,213 sequences; 29,181,415 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq101 269 3e-67
seq338 134 1e-26
seq145 100 3e-16
seq64 87.8 2e-12
>seq101
Length=72697
Score = 269 bits (298), Expect = 3e-67
Identities = 500/729 (69%), Gaps = 11/729 (2%)
Strand=Plus/Plus
Query 132718 ACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCC 132777
|| || || | ||| || || ||||| ||||| ||| ||| ||| || | |||
Sbjct 40822 ACAAGTAGGCGGTCAGCAACAAACTCAATGTACTGCTTCATCAGATCGGCGTTCATTCCT 40881
Query 132778 AGCAGAC-GCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGT 132836
||||||| ||| ||||| || ||||| || || | |||||| |||| || || ||
Sbjct 40882 AGCAGACCGCAG-GGCAGAGCCTCGGTCAGGAACTCCTTCTCGATCACGACGGCATCAGT 40940
Query 132837 GACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCA 132896
|| ||| | || | || ||| || || | || |||| ||||| || |||
Sbjct 40941 GATGATCTTTTGCACAAGGTCCTTGCTGGGGCGGTTGTTCAGATGCGAGAACAGCAGGCA 41000
Query 132897 AGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCC 132956
|||||||||| |||| |||||| || | ||||| || ||||| ||| |||| ||
Sbjct 41001 AGCAAAGTCGGTGTGCAGGCCCTCATCACGAGAAATAAGCTCGTTTGAGAAGGTCAGACC 41060
Query 132957 GGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGAC 133016
|||||||| || || || ||||| || |||| |||||| ||| || || ||||
Sbjct 41061 AGGCATGAGACCACGCTTGCGCAGCCAGAAGATGGAGGCGAAGGCGCCTGAGAAAAAGAT 41120
Query 133017 GCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGAT 133076
||||||||| || || || || || ||||||| | | ||||| | || ||| || |||
Sbjct 41121 GCCCTCGACAGCAGCAAAGGCAACTAGGCGCTGGGCAAACGTCGACTCCTTGTCGGTGAT 41180
Query 133077 CCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAA 133136
||| ||| ||||| |||||||| || ||| || || || || ||||| || ||
Sbjct 41181 CCACTTCAGAGCCCAGTCGGCCTTGCGGCGGATGCAGGGAATAGTGTCAATGGCATTGAA 41240
Query 133137 CAAACGGAGTTTCTCTTCCGAGGAACGC---ACGTAGGTGTCGATGAGGGTCGAATACAT 133193
|| || | | || ||||| | | ||||||||| || || ||| || |
Sbjct 41241 CA---GGTATGTGCGTTGCGAGGGCTCCTTGATGTAGGTGTCAATCAGCAGCGAGTAGGT 41297
Query 133194 TTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCAC 133253
||| ||||| | ||| ||||| ||| || || ||||| ||||| || |||||| |
Sbjct 41298 TTCAGAGTGGATGTTTTCCATCATGATCTGGAAACCGTAGAAGCAGCGGGCCTCGGGGAT 41357
Query 133254 CTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGC 133313
|||||| || | ||| ||||| || |||||||||||||||||||| || ||| ||
Sbjct 41358 CTGCACCTCGCCTGAGAAGCGCTCAACGAGATTTTCGTTGACGATGCCATCAGAGGCAGC 41417
Query 133314 GAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCG---CTCCCA 133370
|| ||||| || | ||| |||||| | |||||| | ||||| || | |||
Sbjct 41418 AAAGAAGGCAAGAATGTGGGAGATGAAGTACTGCTCGTCTTTGTTCAGACGGTTGTTCCA 41477
Query 133371 GTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTT 133430
|||| | ||||| || || || | |||||| | ||||| || || |||||||| ||
Sbjct 41478 GTCGTGGAGATCCTTAGAGAGATCAATCTCCTCAGCAGTCCAGAAGGAGGCCTCGGCCTT 41537
Query 133431 TTTGTACAT 133439
||||||||
Sbjct 41538 CTTGTACAT 41546
>seq338
Length=64627
Score = 134 bits (148), Expect = 1e-26
Identities = 167/229 (73%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| ||||| || || | |||||||| ||||| ||| |||| |||||| || |
Sbjct 52239 ATGCAAATCTTCGTCAAGACCTTGACGGGCAAGACCATTACCCTCGAAGTCGAGTCCTCT 52180
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|| | | | | | | ||| || |||| ||||| ||||| || || | || ||
Sbjct 52179 GATACCATTGACAATGTCAAATCCAAGATCCAGGACAAGGAGGGTATCCCTCCGGATCAG 52120
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| ||||| | ||| || || ||||| || || | ||||||||| ||||||||||
Sbjct 52119 CAGCGTCTCATCTTCGCCGGAAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTACAAC 52060
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472
||||| ||||| | || || || ||||| |||||| || | || ||||
Sbjct 52059 ATCCAGAAGGAGTCTACTCTTCACTTGGTTCTGCGTCTGCGTGGTGGCC 52011
Score = 116 bits (128), Expect = 4e-21
Identities = 157/216 (73%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 38256 GTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA- 38314
|| || || || || || || ||||| ||| |||| |||||| || |||||| | | |
Sbjct 52683 GTCAAGACCCTTACCGGAAAGACCATTACCCTCGAAGTCGAGTCCTCCGACACCATTGAC 52624
Query 38315 AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCAT 38374
|||| | || || |||| ||||| ||||| || || | ||||| ||||| |||||
Sbjct 52623 AACG-TCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCGGACCAGCAGCGTCTCAT 52565
Query 38375 TTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA 38434
| ||| || || ||||| || || | ||||||||| |||||||||||| || || ||
Sbjct 52564 CTTCGCCGGAAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTACAACATTCAGAAAGA 52505
Query 38435 AGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
| | || || || ||||| |||||| || | || ||
Sbjct 52504 ATCTACTCTTCACTTGGTCCTGCGTCTGCGTGGTGG 52469
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| ||||| || || | |||||||| ||||| ||| |||| |||||| || |
Sbjct 52467 ATGCAAATCTTCGTCAAGACCTTGACGGGCAAGACCATTACCCTCGAAGTCGAGTCCTCT 52408
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|| | | | | | | || || |||| || || ||||| || ||| | || ||
Sbjct 52407 GATACCATTGACAATGTCAAGTCCAAGATCCAGGATAAGGAGGGTATCCCCCCGGATCAG 52348
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| ||||||| || || || ||||| || || | || ||||| |||||||||
Sbjct 52347 CAGCGTCTCATTTTTGCTGGAAAGCAGCTCGAGGATGGCCGTACCCTTTCGGACTACAAC 52288
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
|| || || ||| | || || || ||||| |||||| || | || ||
Sbjct 52287 ATTCAGAAAGAATCTACTCTTCACTTGGTTCTGCGTCTGCGTGGTGG 52241
Score = 91.5 bits (100), Expect = 1e-13
Identities = 137/192 (71%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGA 38326
|| ||||| ||||||||| |||| || ||| | | || | | | |||| ||||
Sbjct 52955 ACTGGCAAGACCATCACCCTCGAGGTGGAGTCTTCGGATACTATTGACAACG-TTAAGTC 52897
Query 38327 AAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAA 38386
|| |||| ||||| ||||| || || | ||||| ||||| ||||| | ||| || ||
Sbjct 52896 TAAGATCCAGGACAAGGAGGGTATCCCTCCGGACCAGCAGCGTCTCATCTTCGCTGGAAA 52837
Query 38387 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCA 38446
||||| || || | |||||||| |||||||||||| || ||||| | || || ||
Sbjct 52836 GCAGCTTGAGGATGGCCGCACCCTGTCCGACTACAACATTCAGAAGGAGTCTACTCTCCA 52777
Query 38447 TTTGGTGCTGCG 38458
| | ||||| ||
Sbjct 52776 TCTAGTGCTCCG 52765
>seq145
Length=91869
Score = 100 bits (110), Expect = 3e-16
Identities = 138/193 (72%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300
|| ||||| || ||||| || || || ||||| || || || ||| |||| || ||| ||
Sbjct 6212 AAGATGCAGATTTTCGTCAAGACCCTTACGGGTAAGACGATTACCCTCGAGGTTGAGTCC 6153
Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360
| |||| | | | | | || || || | ||||| ||||| |||||| | |||
Sbjct 6152 TCGGACACCATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCGGAC 6093
Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420
|| ||||| || || | ||| ||||| |||||||| || | |||||||| ||||||
Sbjct 6092 CAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTGTCTGACTAC 6033
Query 38421 AACATCCAAAAGG 38433
||||| || ||||
Sbjct 6032 AACATTCAGAAGG 6020
>seq64
Length=146407
Score = 87.8 bits (96), Expect = 2e-12
Identities = 145/207 (70%), Gaps = 2/207 (1%)
Strand=Plus/Plus
Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312
||||| || || || ||||| || ||||| ||| | || |||||| | | |||| |
Sbjct 70747 TTCGTCAAGACCCTGACGGGTAAGACCATTACCCTGGAGGTCGAGTCTTCGGACACGATC 70806
Query 38313 CA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCT 38371
| |||| | || || |||| ||||| ||||| |||||| | ||||| ||||| |
Sbjct 70807 GACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCTT 70865
Query 38372 CATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAA 38431
|| | || || || ||||| || || | ||||| || ||||||||||||||| ||
Sbjct 70866 GATCTTTGCTGGTAAGCAGCTTGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAA 70925
Query 38432 GGAAGCGACGCTGCATTTGGTGCTGCG 38458
||| | || || || | || |||||
Sbjct 70926 GGAGTCCACCCTCCACCTTGTCCTGCG 70952
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500165216129920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |