Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20platani_20[genbank_20GCA_5F000978885.1_202015-04-23] 1,213 sequences; 29,181,415 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq101 269 3e-67 seq338 134 1e-26 seq145 100 3e-16 seq64 87.8 2e-12 >seq101 Length=72697 Score = 269 bits (298), Expect = 3e-67 Identities = 500/729 (69%), Gaps = 11/729 (2%) Strand=Plus/Plus Query 132718 ACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCC 132777 || || || | ||| || || ||||| ||||| ||| ||| ||| || | ||| Sbjct 40822 ACAAGTAGGCGGTCAGCAACAAACTCAATGTACTGCTTCATCAGATCGGCGTTCATTCCT 40881 Query 132778 AGCAGAC-GCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGT 132836 ||||||| ||| ||||| || ||||| || || | |||||| |||| || || || Sbjct 40882 AGCAGACCGCAG-GGCAGAGCCTCGGTCAGGAACTCCTTCTCGATCACGACGGCATCAGT 40940 Query 132837 GACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCA 132896 || ||| | || | || ||| || || | || |||| ||||| || ||| Sbjct 40941 GATGATCTTTTGCACAAGGTCCTTGCTGGGGCGGTTGTTCAGATGCGAGAACAGCAGGCA 41000 Query 132897 AGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCC 132956 |||||||||| |||| |||||| || | ||||| || ||||| ||| |||| || Sbjct 41001 AGCAAAGTCGGTGTGCAGGCCCTCATCACGAGAAATAAGCTCGTTTGAGAAGGTCAGACC 41060 Query 132957 GGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGAC 133016 |||||||| || || || ||||| || |||| |||||| ||| || || |||| Sbjct 41061 AGGCATGAGACCACGCTTGCGCAGCCAGAAGATGGAGGCGAAGGCGCCTGAGAAAAAGAT 41120 Query 133017 GCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGAT 133076 ||||||||| || || || || || ||||||| | | ||||| | || ||| || ||| Sbjct 41121 GCCCTCGACAGCAGCAAAGGCAACTAGGCGCTGGGCAAACGTCGACTCCTTGTCGGTGAT 41180 Query 133077 CCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAA 133136 ||| ||| ||||| |||||||| || ||| || || || || ||||| || || Sbjct 41181 CCACTTCAGAGCCCAGTCGGCCTTGCGGCGGATGCAGGGAATAGTGTCAATGGCATTGAA 41240 Query 133137 CAAACGGAGTTTCTCTTCCGAGGAACGC---ACGTAGGTGTCGATGAGGGTCGAATACAT 133193 || || | | || ||||| | | ||||||||| || || ||| || | Sbjct 41241 CA---GGTATGTGCGTTGCGAGGGCTCCTTGATGTAGGTGTCAATCAGCAGCGAGTAGGT 41297 Query 133194 TTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCAC 133253 ||| ||||| | ||| ||||| ||| || || ||||| ||||| || |||||| | Sbjct 41298 TTCAGAGTGGATGTTTTCCATCATGATCTGGAAACCGTAGAAGCAGCGGGCCTCGGGGAT 41357 Query 133254 CTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGC 133313 |||||| || | ||| ||||| || |||||||||||||||||||| || ||| || Sbjct 41358 CTGCACCTCGCCTGAGAAGCGCTCAACGAGATTTTCGTTGACGATGCCATCAGAGGCAGC 41417 Query 133314 GAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCG---CTCCCA 133370 || ||||| || | ||| |||||| | |||||| | ||||| || | ||| Sbjct 41418 AAAGAAGGCAAGAATGTGGGAGATGAAGTACTGCTCGTCTTTGTTCAGACGGTTGTTCCA 41477 Query 133371 GTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTT 133430 |||| | ||||| || || || | |||||| | ||||| || || |||||||| || Sbjct 41478 GTCGTGGAGATCCTTAGAGAGATCAATCTCCTCAGCAGTCCAGAAGGAGGCCTCGGCCTT 41537 Query 133431 TTTGTACAT 133439 |||||||| Sbjct 41538 CTTGTACAT 41546 >seq338 Length=64627 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || | |||||||| ||||| ||| |||| |||||| || | Sbjct 52239 ATGCAAATCTTCGTCAAGACCTTGACGGGCAAGACCATTACCCTCGAAGTCGAGTCCTCT 52180 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | ||| || |||| ||||| ||||| || || | || || Sbjct 52179 GATACCATTGACAATGTCAAATCCAAGATCCAGGACAAGGAGGGTATCCCTCCGGATCAG 52120 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| ||||| | ||| || || ||||| || || | ||||||||| |||||||||| Sbjct 52119 CAGCGTCTCATCTTCGCCGGAAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTACAAC 52060 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 ||||| ||||| | || || || ||||| |||||| || | || |||| Sbjct 52059 ATCCAGAAGGAGTCTACTCTTCACTTGGTTCTGCGTCTGCGTGGTGGCC 52011 Score = 116 bits (128), Expect = 4e-21 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 38256 GTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA- 38314 || || || || || || || ||||| ||| |||| |||||| || |||||| | | | Sbjct 52683 GTCAAGACCCTTACCGGAAAGACCATTACCCTCGAAGTCGAGTCCTCCGACACCATTGAC 52624 Query 38315 AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCAT 38374 |||| | || || |||| ||||| ||||| || || | ||||| ||||| ||||| Sbjct 52623 AACG-TCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCGGACCAGCAGCGTCTCAT 52565 Query 38375 TTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA 38434 | ||| || || ||||| || || | ||||||||| |||||||||||| || || || Sbjct 52564 CTTCGCCGGAAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTACAACATTCAGAAAGA 52505 Query 38435 AGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 | | || || || ||||| |||||| || | || || Sbjct 52504 ATCTACTCTTCACTTGGTCCTGCGTCTGCGTGGTGG 52469 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || | |||||||| ||||| ||| |||| |||||| || | Sbjct 52467 ATGCAAATCTTCGTCAAGACCTTGACGGGCAAGACCATTACCCTCGAAGTCGAGTCCTCT 52408 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | || || |||| || || ||||| || ||| | || || Sbjct 52407 GATACCATTGACAATGTCAAGTCCAAGATCCAGGATAAGGAGGGTATCCCCCCGGATCAG 52348 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| ||||||| || || || ||||| || || | || ||||| ||||||||| Sbjct 52347 CAGCGTCTCATTTTTGCTGGAAAGCAGCTCGAGGATGGCCGTACCCTTTCGGACTACAAC 52288 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || || || ||| | || || || ||||| |||||| || | || || Sbjct 52287 ATTCAGAAAGAATCTACTCTTCACTTGGTTCTGCGTCTGCGTGGTGG 52241 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGA 38326 || ||||| ||||||||| |||| || ||| | | || | | | |||| |||| Sbjct 52955 ACTGGCAAGACCATCACCCTCGAGGTGGAGTCTTCGGATACTATTGACAACG-TTAAGTC 52897 Query 38327 AAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAA 38386 || |||| ||||| ||||| || || | ||||| ||||| ||||| | ||| || || Sbjct 52896 TAAGATCCAGGACAAGGAGGGTATCCCTCCGGACCAGCAGCGTCTCATCTTCGCTGGAAA 52837 Query 38387 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCA 38446 ||||| || || | |||||||| |||||||||||| || ||||| | || || || Sbjct 52836 GCAGCTTGAGGATGGCCGCACCCTGTCCGACTACAACATTCAGAAGGAGTCTACTCTCCA 52777 Query 38447 TTTGGTGCTGCG 38458 | | ||||| || Sbjct 52776 TCTAGTGCTCCG 52765 >seq145 Length=91869 Score = 100 bits (110), Expect = 3e-16 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || || ||||| || || || ||| |||| || ||| || Sbjct 6212 AAGATGCAGATTTTCGTCAAGACCCTTACGGGTAAGACGATTACCCTCGAGGTTGAGTCC 6153 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | | | || || || | ||||| ||||| |||||| | ||| Sbjct 6152 TCGGACACCATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCGGAC 6093 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| || || | ||| ||||| |||||||| || | |||||||| |||||| Sbjct 6092 CAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTGTCTGACTAC 6033 Query 38421 AACATCCAAAAGG 38433 ||||| || |||| Sbjct 6032 AACATTCAGAAGG 6020 >seq64 Length=146407 Score = 87.8 bits (96), Expect = 2e-12 Identities = 145/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || ||||| || ||||| ||| | || |||||| | | |||| | Sbjct 70747 TTCGTCAAGACCCTGACGGGTAAGACCATTACCCTGGAGGTCGAGTCTTCGGACACGATC 70806 Query 38313 CA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCT 38371 | |||| | || || |||| ||||| ||||| |||||| | ||||| ||||| | Sbjct 70807 GACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCTT 70865 Query 38372 CATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAA 38431 || | || || || ||||| || || | ||||| || ||||||||||||||| || Sbjct 70866 GATCTTTGCTGGTAAGCAGCTTGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAA 70925 Query 38432 GGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||| | || || || | || ||||| Sbjct 70926 GGAGTCCACCCTCCACCTTGTCCTGCG 70952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500165216129920