Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20platani_20[genbank_20GCA_5F000978885.1_202015-04-23]
1,213 sequences; 29,181,415 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq3 190 3e-43
seq78 168 8e-37
seq11 152 7e-32
>seq3
Length=125895
Score = 190 bits (210), Expect = 3e-43
Identities = 281/398 (71%), Gaps = 0/398 (0%)
Strand=Plus/Minus
Query 7463 TCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCA 7522
|| |||||||||| || || || || ||||| | ||||| || |||||||| | |||
Sbjct 87826 TCCTCACCACCCAGATGGGTGTCACCAGCGGTGGACTTGACCTCGAAGATACCGTCCTCA 87767
Query 7523 ATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTA 7582
||| | | || ||| ||||| || |||||||||||||| || || || || |||||
Sbjct 87766 ATGGTCAGCAGCGAGACATCGAAAGTACCACCACCCAGATCGAAGATCAGGACGTTGCGC 87707
Query 7583 TCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATA 7642
|| | || ||||| || |||||||| || || || || || || || || |||||
Sbjct 87706 TCACCCTCGACCTTCTTGTCAAGACCGTAGGCAATGGCAGCAGCAGTGGGCTCGTTAATG 87647
Query 7643 ATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAA 7702
||||| || ||||||||| ||||| | | || || || || || || || ||
Sbjct 87646 ATACGCAGGACGTTCAGGCCGGCAATGAGACCAGAGTCCTTGGTAGCCTGACGCTGAGAG 87587
Query 7703 TCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGAT 7762
||||| |||||||| ||||| || | ||| |||| |||| | | || || || ||
Sbjct 87586 TCGTTGAAGTAGGCGGGGACAGTAATGACAGCGTTGTTGACATCGGTGCCCAGGTAGGAC 87527
Query 7763 TCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGT 7822
|| || | || ||| ||||| |||||||| || || |||||||||| | |||||
Sbjct 87526 TCGGCAGTCTCACGCATCTTGGTCAGAACCATGGAGGAGATCTCTTCAGGGGTGAACTGC 87467
Query 7823 TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTT 7860
|| || ||||| || || || || || || || || ||
Sbjct 87466 TTGGTCTCACCCTTGAACTCGACCTCGATAATAGGCTT 87429
>seq78
Length=206936
Score = 168 bits (186), Expect = 8e-37
Identities = 255/360 (71%), Gaps = 7/360 (2%)
Strand=Plus/Minus
Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516
|||||||| |||||||||| ||| || || || || || || ||| ||||||| |||
Sbjct 148602 TCGAAATCCTCACCACCCAGGTGAGTGTCACCAGCAGTAGCGCGGACCTCAAAGACACCA 148543
Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTA-- 7574
| ||||| | | ||||||||||| ||||||||||| || || | | || |
Sbjct 148542 CTCTCAATAGACAGAAGAGAAACATCAAAGGTACCACCACCAAGATCGTACACGATGATC 148483
Query 7575 ---CGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTG 7631
|| ||| | || ||| || |||| || |||||||| || || || || ||||| |
Sbjct 148482 TGGCGCTCG-GTGGT-GTCGTTAGTCTTGTCCAGACCGTAGGCAATGGCAGCGGCCGTAG 148425
Query 7632 GTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTT 7691
| || || | || ||||||| |||||| || |||||||| | ||||| || || || |
Sbjct 148424 GCTCGTTGACAACACGAAGAATGTTCAGACCGGCAATAGTACCAGCATCCTTGGTAGCCT 148365
Query 7692 GTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTAC 7751
| || || | ||| || |||||||| ||||| || ||||| |||| ||||| ||| |
Sbjct 148364 GACGCTGAGCATCATTGAAGTAGGCAGGGACGGTGACGACGGCGTGAGTGACGGTCTGGC 148305
Query 7752 CGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAG 7811
| || || || || |||| || ||||| ||| |||| ||| | || | ||| ||||
Sbjct 148304 CAAGGTAAGACTCGGCGACTTCCTTCATCTTGCCTAGAATCATGGCAGAGACCTCCTCAG 148245
>seq11
Length=392749
Score = 152 bits (168), Expect = 7e-32
Identities = 337/505 (67%), Gaps = 9/505 (2%)
Strand=Plus/Minus
Query 7304 TCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCC 7363
|| || |||||||| || || || ||||| | || ||||| || ||||| || ||
Sbjct 24828 TCGATCTCAATGGTGGTCTGGGCACCGGAAGAAAGGGTACGCTTGGCACGCTCGCAAGCA 24769
Query 7364 GTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTA 7423
|| || | ||| || |||||||| | | | ||| | || ||||| || || |
Sbjct 24768 GTGCGGAGACGGCGCAGGGCACGAGCATCAGAGGACAGGTCCTTCTTGGTCTTGCGGGTG 24709
Query 7424 AACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTA 7483
|| || | | ||| || || | | ||||| || | |||||||| ||| ||
Sbjct 24708 AAGTCCTTCTTGCAGTACTCCAGCAGGTTGGTGTCGAAGTCCTGACCACCCAGGTGAGTG 24649
Query 7484 TCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCA 7543
|| || ||||| || ||||| |||| ||| || | |||||| | || || |||||
Sbjct 24648 TCACCAGCGGTAGCCTTGACGGTGAAGACACCACCCTGAATGTTCAGCAGGGAGACATCG 24589
Query 7544 AACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCG 7603
|| |||||||||||||| || | || || ||||| || | || | |||| |
Sbjct 24588 AAAGTACCACCACCCAGATCGTAGATCAGGACGTTGCGCTCCTTCTC---GGACTTACCA 24532
Query 7604 ------AGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTC 7657
|||||||| || || || || || || || || || || ||||| ||| ||||
Sbjct 24531 GCACCCAGACCGTAGGCAATGGCAGCGGCGGTAGGCTCGTTGATGATACGCAGAACGTTC 24472
Query 7658 AGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCC 7717
|||||||| || | | ||||| || || || || || || ||||| ||||||||
Sbjct 24471 AGGCCAGCGATGGCACCGGCATCCTTGGTAGCCTGACGCTGGTTGTCGTTGAAGTAGGCA 24412
Query 7718 GGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTC 7777
||||| || | ||| || | | ||| ||||| ||||| | | || || || || |||
Sbjct 24411 GGGACGGTGATGACAGCCTTCTCGACCTTCTTGCCGAGCTTGGCCTCAGCAATCTCCTTC 24352
Query 7778 ATTTTGGTAAGAACCATCGATGAAA 7802
|| || |||||||| || ||||
Sbjct 24351 ATCTTCAGCAGAACCATGGAAGAAA 24327
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635123169798920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |