Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20platani_20[genbank_20GCA_5F000978885.1_202015-04-23] 1,213 sequences; 29,181,415 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq3 190 3e-43 seq78 168 8e-37 seq11 152 7e-32 >seq3 Length=125895 Score = 190 bits (210), Expect = 3e-43 Identities = 281/398 (71%), Gaps = 0/398 (0%) Strand=Plus/Minus Query 7463 TCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCA 7522 || |||||||||| || || || || ||||| | ||||| || |||||||| | ||| Sbjct 87826 TCCTCACCACCCAGATGGGTGTCACCAGCGGTGGACTTGACCTCGAAGATACCGTCCTCA 87767 Query 7523 ATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTA 7582 ||| | | || ||| ||||| || |||||||||||||| || || || || ||||| Sbjct 87766 ATGGTCAGCAGCGAGACATCGAAAGTACCACCACCCAGATCGAAGATCAGGACGTTGCGC 87707 Query 7583 TCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATA 7642 || | || ||||| || |||||||| || || || || || || || || ||||| Sbjct 87706 TCACCCTCGACCTTCTTGTCAAGACCGTAGGCAATGGCAGCAGCAGTGGGCTCGTTAATG 87647 Query 7643 ATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAA 7702 ||||| || ||||||||| ||||| | | || || || || || || || || Sbjct 87646 ATACGCAGGACGTTCAGGCCGGCAATGAGACCAGAGTCCTTGGTAGCCTGACGCTGAGAG 87587 Query 7703 TCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGAT 7762 ||||| |||||||| ||||| || | ||| |||| |||| | | || || || || Sbjct 87586 TCGTTGAAGTAGGCGGGGACAGTAATGACAGCGTTGTTGACATCGGTGCCCAGGTAGGAC 87527 Query 7763 TCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGT 7822 || || | || ||| ||||| |||||||| || || |||||||||| | ||||| Sbjct 87526 TCGGCAGTCTCACGCATCTTGGTCAGAACCATGGAGGAGATCTCTTCAGGGGTGAACTGC 87467 Query 7823 TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTT 7860 || || ||||| || || || || || || || || || Sbjct 87466 TTGGTCTCACCCTTGAACTCGACCTCGATAATAGGCTT 87429 >seq78 Length=206936 Score = 168 bits (186), Expect = 8e-37 Identities = 255/360 (71%), Gaps = 7/360 (2%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 |||||||| |||||||||| ||| || || || || || || ||| ||||||| ||| Sbjct 148602 TCGAAATCCTCACCACCCAGGTGAGTGTCACCAGCAGTAGCGCGGACCTCAAAGACACCA 148543 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTA-- 7574 | ||||| | | ||||||||||| ||||||||||| || || | | || | Sbjct 148542 CTCTCAATAGACAGAAGAGAAACATCAAAGGTACCACCACCAAGATCGTACACGATGATC 148483 Query 7575 ---CGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTG 7631 || ||| | || ||| || |||| || |||||||| || || || || ||||| | Sbjct 148482 TGGCGCTCG-GTGGT-GTCGTTAGTCTTGTCCAGACCGTAGGCAATGGCAGCGGCCGTAG 148425 Query 7632 GTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTT 7691 | || || | || ||||||| |||||| || |||||||| | ||||| || || || | Sbjct 148424 GCTCGTTGACAACACGAAGAATGTTCAGACCGGCAATAGTACCAGCATCCTTGGTAGCCT 148365 Query 7692 GTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTAC 7751 | || || | ||| || |||||||| ||||| || ||||| |||| ||||| ||| | Sbjct 148364 GACGCTGAGCATCATTGAAGTAGGCAGGGACGGTGACGACGGCGTGAGTGACGGTCTGGC 148305 Query 7752 CGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAG 7811 | || || || || |||| || ||||| ||| |||| ||| | || | ||| |||| Sbjct 148304 CAAGGTAAGACTCGGCGACTTCCTTCATCTTGCCTAGAATCATGGCAGAGACCTCCTCAG 148245 >seq11 Length=392749 Score = 152 bits (168), Expect = 7e-32 Identities = 337/505 (67%), Gaps = 9/505 (2%) Strand=Plus/Minus Query 7304 TCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCC 7363 || || |||||||| || || || ||||| | || ||||| || ||||| || || Sbjct 24828 TCGATCTCAATGGTGGTCTGGGCACCGGAAGAAAGGGTACGCTTGGCACGCTCGCAAGCA 24769 Query 7364 GTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTA 7423 || || | ||| || |||||||| | | | ||| | || ||||| || || | Sbjct 24768 GTGCGGAGACGGCGCAGGGCACGAGCATCAGAGGACAGGTCCTTCTTGGTCTTGCGGGTG 24709 Query 7424 AACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTA 7483 || || | | ||| || || | | ||||| || | |||||||| ||| || Sbjct 24708 AAGTCCTTCTTGCAGTACTCCAGCAGGTTGGTGTCGAAGTCCTGACCACCCAGGTGAGTG 24649 Query 7484 TCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCA 7543 || || ||||| || ||||| |||| ||| || | |||||| | || || ||||| Sbjct 24648 TCACCAGCGGTAGCCTTGACGGTGAAGACACCACCCTGAATGTTCAGCAGGGAGACATCG 24589 Query 7544 AACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCG 7603 || |||||||||||||| || | || || ||||| || | || | |||| | Sbjct 24588 AAAGTACCACCACCCAGATCGTAGATCAGGACGTTGCGCTCCTTCTC---GGACTTACCA 24532 Query 7604 ------AGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTC 7657 |||||||| || || || || || || || || || || ||||| ||| |||| Sbjct 24531 GCACCCAGACCGTAGGCAATGGCAGCGGCGGTAGGCTCGTTGATGATACGCAGAACGTTC 24472 Query 7658 AGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCC 7717 |||||||| || | | ||||| || || || || || || ||||| |||||||| Sbjct 24471 AGGCCAGCGATGGCACCGGCATCCTTGGTAGCCTGACGCTGGTTGTCGTTGAAGTAGGCA 24412 Query 7718 GGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTC 7777 ||||| || | ||| || | | ||| ||||| ||||| | | || || || || ||| Sbjct 24411 GGGACGGTGATGACAGCCTTCTCGACCTTCTTGCCGAGCTTGGCCTCAGCAATCTCCTTC 24352 Query 7778 ATTTTGGTAAGAACCATCGATGAAA 7802 || || |||||||| || |||| Sbjct 24351 ATCTTCAGCAGAACCATGGAAGAAA 24327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635123169798920