Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20platani_20[genbank_20GCA_5F000978885.1_202015-04-23]
1,213 sequences; 29,181,415 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq411 152 6e-32
seq101 111 2e-19
>seq411
Length=11963
Score = 152 bits (168), Expect = 6e-32
Identities = 818/1292 (63%), Gaps = 15/1292 (1%)
Strand=Plus/Minus
Query 105935 TAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 105994
|| ||||| | ||||| ||||| ||||| ||||| || ||||| || || | ||| |
Sbjct 8012 TAAATGTTGGATGTGTACGGTTCGAAGCACTCATTGTTGCCCAAAATCTGCGACGTGCTG 7953
Query 105995 GCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCC 106054
||||| ||||| ||||| | | |||| || || | ||| | | ||| || |||
Sbjct 7952 GCTGTAGGCATGGGTGCAACTAGAAGAGAATTGCGTACACCATGCTGCTTAATCTTCTCC 7893
Query 106055 TTGAGAACATCCCAGTCGTA--GTTGAGCTTGGTTTCACCTTCCCACATATCAAATTGAA 106112
|| ||| | |||||| | | | | || || |||| | ||||||||||||| || |
Sbjct 7892 TTTAGAGAAGTCCAGTCCCACAGGTCA-CTAGGAGTCACAT-CCCACATATCAAACTGCA 7835
Query 106113 GCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCA 106172
| |||||||| |||||||||||| | || || | ||| | | | || |
Sbjct 7834 AGATGCCTTGGGAGACAGGAGAACCCTCATAAGTTGAGTAAGTACCCTCCGTCTGGGCGA 7775
Query 106173 ATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCT 106232
||| || || | ||||| || ||||||||||| || | || | ||
Sbjct 7774 TTTCCATTGAAGCAGTTAGTGCGGCGTGGTAGATGGTTTCAAAAATCTGCTTGTTGAGCT 7715
Query 106233 CCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTT 106292
|||||| || ||||| | |||| || || | || || || || |
Sbjct 7714 GGCGTGCTTCAGGGGATTCAAAAGGCATGCGGAGAGCAAGGAAAGCGTCAGCCAGGCCCT 7655
Query 106293 GAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGAT 106352
| ||||| | |||||| || | ||| ||||| || || | || || || || |
Sbjct 7654 GTACACCGACACCAATGGGACGGTGGCGCATGTTGCTGTTGTGAGCTTCCTGGACAGGGT 7595
Query 106353 AAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAA 106412
| ||| || |||| |||||||| || ||||| | |||| ||| || |
Sbjct 7594 AGTGATTCACATCGATGATGCGGTTTAGGTTGCGAACAACAACTTGGGTGACTTCGTGTA 7535
Query 106413 GTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATG 106472
| |||| | | ||| | | | | | | || | |||||||||| ||||
Sbjct 7534 GCTTTTTAAAGTCATACTCACCCTTGTTGTAGTCCACGAAGGAAGGAAGGGCGAGAGATG 7475
Query 106473 CCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGT 106532
| | ||||| ||||| |||||| | |||||| | ||| || || |||| ||
Sbjct 7474 CTAGGTTGCACACAGCGACCTCATCAGGGGCACAGTACTCGATAATCTCAGTGCACAGGT 7415
Query 106533 TGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGT 106592
| ||||| ||| || || | ||| || || || ||||| |||||| || ||||
Sbjct 7414 TCGAACTGCGAATGGTACCTAGATTTTTCTGATTGCTCTTGCGGTTGCAGTGGTCTTTGT 7355
Query 106593 AGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA-CATCG 106651
||||||| | || | || ||||| ||||| | || ||||| || | ||||| ||
Sbjct 7354 AGAGCATAAAAGGGTTGCCAGTCTCAGTCTGAGCCTCCAGAATGGCATACCACAGTTTCT 7295
Query 106652 GCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCA 106711
| | || | |||| | | || |||||| |||||||||| || || || |||
Sbjct 7294 GGGCCTTG-ACAACCATGCGACCGCGGCCCTCCTTCTCGTACTTTTCATACAGAGCCTCA 7236
Query 106712 AACTCCTCACCCACCGC-GTCGGAGAGACCTGGTGCCTT-GTCTGGACAGAAAAGAGACC 106769
||||| || ||| || || | | | | || || || | || || | |||| ||
Sbjct 7235 AACTCTTC-GCCATAGCAATCCGCCA-AGCCGGGGCATTCATTGGGGCACATGAGAGTCC 7178
Query 106770 ATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGA 106829
| | || || |||||| ||||||||||| | ||| |||||||||| | || |
Sbjct 7177 AGTCCTCATTCTTCTCAACACGCTTCATGAACAAGTCGCAGATCCACAGGGCCAAGAATA 7118
Query 106830 GATCTCTA-CACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATG 106888
| || | | ||| || | ||||| | || ||||| ||||| || |||||||| | |
Sbjct 7117 GGTCACGAGCACGGA-CTTCTTCCTTTCCGTGGTTCTTGCGTAAGTCGAGGAACTCGAAG 7059
Query 106889 ATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG---ACGCCCAGCT 106945
| ||| || ||||||||||| ||||| | || | | ||| ||| ||| |
Sbjct 7058 ACATCAGCATGCCATGGCTCGAGATAAATGGCAAAGGCTCCAGGTCGCTTGTTTCCACCC 6999
Query 106946 TGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGAT 107005
|| | ||||| || || ||| ||| || || || ||||| |||| || || | ||
Sbjct 6998 TGGTCAACATAACGGGCGGTGTTGTTGAAAACACGTAGCATGGGAACGATGCCGTTCGAA 6939
Query 107006 TGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCA 107065
||| || || || ||| ||| | |||| | | | || | | | ||
Sbjct 6938 GTACCGTTAGTGCCAGCAATGTAAGAGCCAGTGGCACGAATACGGTGAACATTGAGACCG 6879
Query 107066 ATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTG 107125
||||| |||||| ||| || || ||||| | | || || | || || || | |
Sbjct 6878 ATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAAATGCCCTCG 6819
Query 107126 ATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCA 107185
|| ||| ||||| || ||| ||||| || |||| ||| | || |||||
Sbjct 6818 ATGCTGTCATCCTTCATGTCGACTAGGAAACATGAAGACAACTGAGCCTGGGGAGTACCG 6759
Query 107186 GCATTGAAGAGGGTTGGTGTTGCGTGAATGAA 107217
||||| ||||| || |||| ||||||| ||||
Sbjct 6758 GCATTAAAGAGCGTAGGTGATGCGTGAGTGAA 6727
>seq101
Length=72697
Score = 111 bits (122), Expect = 2e-19
Identities = 340/520 (65%), Gaps = 7/520 (1%)
Strand=Plus/Plus
Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333
||||| || ||| || |||||||| || |||||||| || ||||||||| || ||
Sbjct 41002 GCAAAGTCGGTGTGCAGGCCCTCATCACGAGAAATAAGCTCGTTTGAGAAGGTCAGACCA 41061
Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393
||||||||||| ||||| || ||| | || | | ||| | || ||||| |||||
Sbjct 41062 GGCATGAGACCACGCTTGCGCAGCCAGAAGATGGAGGCGAAGGCGCCTGAGAAAAAGATG 41121
Query 117394 CCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGT-GTCAAA 117452
||||| ||| ||||| |||| ||||||| ||| || | ||| | |||| | |
Sbjct 41122 CCCTCGACAGCAGCAAAGGCAACTAGGCGCTGGGCAAACG-TCGACTCCTTGTCGGTGAT 41180
Query 117453 CCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAA 117512
||| |||| ||||| | ||||| || || || | ||| | ||||| | ||
Sbjct 41181 CCACTTCAGAGCCCAGTCGGCCTTGCGGCGGATGCAGGGAATAGTGTCAATGGCATTGAA 41240
Query 117513 TAACTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTC 117572
| | | || || ||||| ||||| ||||||||| || || |||||
Sbjct 41241 CAGGTATGTGCGTTGCGAGGGCTCCTTGATGTAGGTGTCAATCAGCAGCGAGTAGGTTTC 41300
Query 117573 GCCATGAACCATTT-CATTATGGCATTGATATGCGTAGAATGAGCGCGCTTCGCTTATCT 117631
|| | ||| ||| ||| | || | ||||||| |||| || ||| ||||
Sbjct 41301 AGAGTGGATGTTTTCCATCATGATCTGGA-AACCGTAGAAGCAGCGGGCCTCGGGGATCT 41359
Query 117632 GCACTTCATCCGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAA 117691
|||| || | | || | | || ||| || || || ||||| || ||||||
Sbjct 41360 GCACCTCGCCTGAGAAGCGCTCAACGAGATTTTCGTTGACGATGCCATCAGAGGCAGCAA 41419
Query 117692 AGAATGCCAGGATGTACTTTATGAATTTCTTTTCATTTTCATTCA---GGGTCTTCCAGT 117748
|||| || || |||| ||||| | || || | || |||| || | |||||||
Sbjct 41420 AGAAGGCAAGAATGTGGGAGATGAAGTACTGCTCGTCTTTGTTCAGACGGTTGTTCCAGT 41479
Query 117749 CGTCAAGATCTTTGGACAAATCAACTTCTTCCGCAGTCCA 117788
||| ||||| || || | ||||| || || ||||||||
Sbjct 41480 CGTGGAGATCCTTAGAGAGATCAATCTCCTCAGCAGTCCA 41519
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589971854416120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |