Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20platani_20[genbank_20GCA_5F000978885.1_202015-04-23] 1,213 sequences; 29,181,415 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq411 122 1e-22 >seq411 Length=11963 Score = 122 bits (134), Expect = 1e-22 Identities = 485/760 (64%), Gaps = 6/760 (1%) Strand=Plus/Minus Query 47876 AAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTAT 47935 ||| || | ||||||||| || || ||||| ||||||| || | || | || || Sbjct 7488 AAGGGCGAGAGATGCTAGGTTGCACACAGCGACCTCATCAGGGGCACAGTACTCGATAAT 7429 Query 47936 TTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTT 47995 |||| || || || || || ||||| | ||||| ||||| | ||| Sbjct 7428 CTCAGTGCACAGGTTCGAACTGCGAATGGTACCTAGATTTTTCTGATTGCTCTTGCGGTT 7369 Query 47996 ACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGA 48055 || ||| ||||| ||||||||||| | ||||| || |||||| || | || | Sbjct 7368 GCAGTGGTCTTTGTAGAGCATAAAAGGGTTGCCAGTCTCAGTCTGAGCCTCCAGAATGGC 7309 Query 48056 TTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGT 48115 | ||| | || ||||| | ||| | | | || | ||||| || Sbjct 7308 ATACCACAGTTTCTGGGCCTTGACAACCATGCGACCGCGGCCCTCCTTCTCGTACTTTTC 7249 Query 48116 ATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACA 48175 ||| | |||||| || || ||||| || | || || || |||||||| || || Sbjct 7248 ATACAGAGCCTCAAACTCTTCGCCATAGCAATCCGCCAAGCCGGGGCATTCATTGGGGCA 7189 Query 48176 CATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAG 48235 ||| | | ||| ||||||| || | || | |||| || | || ||||| || Sbjct 7188 CATGAGAGTCCAGTCCTCATTCTTCTCAACACGCTTCATGAACAAGTCGCAGATCCACAG 7129 Query 48236 AGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTT-TAAGTTCAA 48294 || | |||| || | || | | |||||| || || ||| | ||||| | | Sbjct 7128 GGCCAAGAATAGGTCACGAGCACGGACTTCTTCCTTTCCGTGGTTCTTGCGTAAGT-CGA 7070 Query 48295 GAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTT 48354 | || || | | ||||||||||||||| || | ||| || || | | || ||||| | Sbjct 7069 GGAACTCGAAGACATCAGCATGCCATGGCTCGAGATAAATGGCAAAGGCTCCAGGTCGCT 7010 Query 48355 TATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAA 48414 | || || || || || | ||| | ||| || ||||| |||| | || ||| || || | Sbjct 7009 TGTTTCCACCCTGGTCAACATAACGGGCGGTGTTGTTGAAAACACGTAGCATGGGAACGA 6950 Query 48415 TACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATA--TTACT 48472 | || || || |||| || || || | ||| ||| ||| | || | ||| | Sbjct 6949 TGCCGTTCGAAGTACCGTTAGTGCCAGCAATGTAAGAGCCAGTGGCACGAATACGGTGAA 6890 Query 48473 AATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATC 48532 |||| | ||| |||||||| ||||| || || || | ||||| || |||||||| Sbjct 6889 CATTG--AGACCGATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATC 6832 Query 48533 ATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGG 48592 ||||| || || || || ||||| |||| | | ||| ||||| ||||| || | Sbjct 6831 GTAAATGCCCTCGATGCTGTCATCCTTCATGTCGACTAGGAAACATGAAGACAACTGAGC 6772 Query 48593 ATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGA 48632 || ||| || | |||||| | || || ||||| ||| Sbjct 6771 CTGGGGAGTACCGGCATTAAAGAGCGTAGGTGATGCGTGA 6732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562100277025320