Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20platani_20[genbank_20GCA_5F000978885.1_202015-04-23]
1,213 sequences; 29,181,415 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq411 122 1e-22
>seq411
Length=11963
Score = 122 bits (134), Expect = 1e-22
Identities = 485/760 (64%), Gaps = 6/760 (1%)
Strand=Plus/Minus
Query 47876 AAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTAT 47935
||| || | ||||||||| || || ||||| ||||||| || | || | || ||
Sbjct 7488 AAGGGCGAGAGATGCTAGGTTGCACACAGCGACCTCATCAGGGGCACAGTACTCGATAAT 7429
Query 47936 TTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTT 47995
|||| || || || || || ||||| | ||||| ||||| | |||
Sbjct 7428 CTCAGTGCACAGGTTCGAACTGCGAATGGTACCTAGATTTTTCTGATTGCTCTTGCGGTT 7369
Query 47996 ACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGA 48055
|| ||| ||||| ||||||||||| | ||||| || |||||| || | || |
Sbjct 7368 GCAGTGGTCTTTGTAGAGCATAAAAGGGTTGCCAGTCTCAGTCTGAGCCTCCAGAATGGC 7309
Query 48056 TTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGT 48115
| ||| | || ||||| | ||| | | | || | ||||| ||
Sbjct 7308 ATACCACAGTTTCTGGGCCTTGACAACCATGCGACCGCGGCCCTCCTTCTCGTACTTTTC 7249
Query 48116 ATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACA 48175
||| | |||||| || || ||||| || | || || || |||||||| || ||
Sbjct 7248 ATACAGAGCCTCAAACTCTTCGCCATAGCAATCCGCCAAGCCGGGGCATTCATTGGGGCA 7189
Query 48176 CATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAG 48235
||| | | ||| ||||||| || | || | |||| || | || ||||| ||
Sbjct 7188 CATGAGAGTCCAGTCCTCATTCTTCTCAACACGCTTCATGAACAAGTCGCAGATCCACAG 7129
Query 48236 AGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTT-TAAGTTCAA 48294
|| | |||| || | || | | |||||| || || ||| | ||||| | |
Sbjct 7128 GGCCAAGAATAGGTCACGAGCACGGACTTCTTCCTTTCCGTGGTTCTTGCGTAAGT-CGA 7070
Query 48295 GAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTT 48354
| || || | | ||||||||||||||| || | ||| || || | | || ||||| |
Sbjct 7069 GGAACTCGAAGACATCAGCATGCCATGGCTCGAGATAAATGGCAAAGGCTCCAGGTCGCT 7010
Query 48355 TATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAA 48414
| || || || || || | ||| | ||| || ||||| |||| | || ||| || || |
Sbjct 7009 TGTTTCCACCCTGGTCAACATAACGGGCGGTGTTGTTGAAAACACGTAGCATGGGAACGA 6950
Query 48415 TACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATA--TTACT 48472
| || || || |||| || || || | ||| ||| ||| | || | ||| |
Sbjct 6949 TGCCGTTCGAAGTACCGTTAGTGCCAGCAATGTAAGAGCCAGTGGCACGAATACGGTGAA 6890
Query 48473 AATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATC 48532
|||| | ||| |||||||| ||||| || || || | ||||| || ||||||||
Sbjct 6889 CATTG--AGACCGATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATC 6832
Query 48533 ATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGG 48592
||||| || || || || ||||| |||| | | ||| ||||| ||||| || |
Sbjct 6831 GTAAATGCCCTCGATGCTGTCATCCTTCATGTCGACTAGGAAACATGAAGACAACTGAGC 6772
Query 48593 ATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGA 48632
|| ||| || | |||||| | || || ||||| |||
Sbjct 6771 CTGGGGAGTACCGGCATTAAAGAGCGTAGGTGATGCGTGA 6732
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562100277025320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |