Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20platani_20[genbank_20GCA_5F000978885.1_202015-04-23]
1,213 sequences; 29,181,415 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq101 223 6e-53
seq411 95.1 2e-14
>seq101
Length=72697
Score = 223 bits (246), Expect = 6e-53
Identities = 571/861 (66%), Gaps = 32/861 (4%)
Strand=Plus/Minus
Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536
|| ||| |||||||||||||||| | ||| |||||| || || |||||||||||
Sbjct 41555 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACTGCTGAGGAGATTGATCTC 41496
Query 25537 GCCAAGGACATGGACGGCTGGTACGC---TCTATCCAAAGACGAGCAGCATTTTCTCAAG 25593
| ||||| | ||| |||| || ||| ||||||||||||| | || ||
Sbjct 41495 TCTAAGGATCTCCACGACTGGAACAACCGTCTGAACAAAGACGAGCAGTACTTCATCTCC 41436
Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653
|| | | || |||||||| ||||||||||| || || ||||| ||||| ||| |
Sbjct 41435 CACATTCTTGCCTTCTTTGCTGCCTCTGATGGCATCGTCAACGAAAATCTCGTTGAGCGC 41376
Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713
||| | | || |||||| | |||||| || ||||||||||||||||| ||
Sbjct 41375 TTCTCAGGCGAGGTGCAGATCCCCGAGGCCCGCTGCTTCTACGGTTTCCAGATCATGATG 41316
Query 25714 GAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGA--CG 25768
||||| | |||||||| || | ||| ||||| || ||||| | || |
Sbjct 41315 GAAAACATCCACTCTGAAACCTACTC---GCTGCTGATTGACACCTACATCAAGGAGCCC 41259
Query 25769 TCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCAC-ATACCCAGCATCAAGAGGAAG 25827
|||| | | || ||||| |||||| || ||| || ||| ||||| | |||
Sbjct 41258 TCGCAACGC-ACATAC-CTGTTCAATGCCATTGA-CACTATTCCCTGCATCCGCCGCAAG 41202
Query 25828 GCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTA 25887
|| ||||| |||||||||||| | | || | ||||||| | |||| || ||
Sbjct 41201 GCCGACTGGGCTCTGAAGTGGATCACCGACAAGGAGTCGACGTTTGCCCAGCGCCTAGTT 41142
Query 25888 GCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCT- 25946
|||||||||||||| ||||||||||||||| || | || || |||||||||||||
Sbjct 41141 GCCTTTGCTGCTGTCGAGGGCATCTTTTTCTCAGGCGCCTTCGCCTCCATCTTCTGGCTG 41082
Query 25947 --CAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGA 26003
||||| | || | |||||| || ||| ||| || |||||||| || | ||
Sbjct 41081 CGCAAGC----GTGGTCTCATGCCTGGTCTGACCTTCTCAAACGAGCTTATTTCTCGTGA 41026
Query 26004 CGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACC 26063
||||| || |||| || ||||| |||||||| | | || || || | || ||
Sbjct 41025 TGAGGGCCTGCACACCGACTTTGCTTGCCTGCTGTTCTCG---CATCTGAACAAC-CGCC 40970
Query 26064 TTCTCAAGAGACC--GTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTT 26121
|||| |||| || | | ||||||| || || || | |||||||||||||||
Sbjct 40969 CCAGCAAG-GACCTTGTGCAAAAGATCATCACTGATGCCGTCGTGATCGAGAAGGAGTTC 40911
Query 26122 CNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATAC 26181
| | || |||||| | || |||| || |||
Sbjct 40910 CTGACCGAGGCTCTGCCCTGCGGTCTGCTAGGAATGAACGCCGATCTGATGAAGCAGTAC 40851
Query 26182 ATTGAGTATGTGGCCGACCATCTGC-TGTGCCAGCTGGGACTCGCCAGACTCTACAGTAC 26240
||||||| ||| || |||| || | ||| | || || || | | ||| || |
Sbjct 40850 ATTGAGTTTGTTGCTGACCGCCTACTTGTTGC-TCTAGGCAACGAGAAGGTGTACCGTGC 40792
Query 26241 GCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGA 26300
| ||||| |||||||| ||||| ||||| ||| | | || ||||| |||||||||||
Sbjct 40791 CACAAACCCATTCGACTTCATGGAGAACATCTCGCTCGGCGGCAAGACTAACTTCTTTGA 40732
Query 26301 AAAGAGGGTCGGCGACTATCA 26321
||| | ||||||||||| ||
Sbjct 40731 GAAGCGTGTCGGCGACTACCA 40711
>seq411
Length=11963
Score = 95.1 bits (104), Expect = 2e-14
Identities = 102/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175
||| || || ||||| || || | || || | | |||||| | ||| || ||| ||||
Sbjct 8052 GTTGACGACCTGGAACTCGCCAGCAAGAACGCGGCGCTGGTAAATGTTGGATGTGTACGG 7993
Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235
||||| || ||| |||||||||| ||||| | ||||||||| || ||||||||||| ||
Sbjct 7992 TTCGAAGCACTCATTGTTGCCCAAAATCTGCGACGTGCTGGCTGTAGGCATGGGTGCAAC 7933
Query 221236 CAGCAGACTGTTGCG 221250
|| ||| |||||
Sbjct 7932 TAGAAGAGAATTGCG 7918
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928830716390720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |