Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20platani_20[genbank_20GCA_5F000978885.1_202015-04-23] 1,213 sequences; 29,181,415 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq65 129 7e-25 >seq65 Length=140905 Score = 129 bits (142), Expect = 7e-25 Identities = 328/496 (66%), Gaps = 5/496 (1%) Strand=Plus/Minus Query 138169 TGAGATGTTTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATAC 138228 |||||||||| |||| |||||||| || ||||| || ||||| ||||| ||||| | Sbjct 49475 TGAGATGTTTCTTGACACAGATAGGACCGACACCAGGGCCACCACCGCCATGAGGAATGC 49416 Query 138229 AGAATGTCTTATGTAAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTA 138288 ||||||||||||||| || | || || ||||| || ||| |||| || | | Sbjct 49415 AGAATGTCTTATGTAGGTTCAAGTGGCACACATCAGCGCCAATCTCACCAGGAGAGGTAA 49356 Query 138289 GACCTACCTGTGCATTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAA 138348 |||| | ||| ||||| | || || || || | || ||||| ||||| | |||| | Sbjct 49355 GACCAATCTGGGCATTCATGTTGGCGCCGTCCATGTACACCTGGCCACCGTAAGCATGCA 49296 Query 138349 CGATCTTACATATCTGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAA 138408 | | | ||| || || || || | |||||| | |||| ||| || || || | Sbjct 49295 CAAGATCACAGGCCTTTCGGACGTCAGGTTCAAAGATACCAAAAGTACTAGGGTAAGTGA 49236 Query 138409 TCATAATACATGAGAGTTCAAATGTATTCATGATTGC-TTTCTTCTCTAGATCTTTGATG 138467 |||| || || |||||| | || | | |||| || ||| ||||| ||| Sbjct 49235 TCATGATGCAGCCAAGTTCATCGGCATGC-TTTTTGCACTTGGCCTCCAGATCAGCGATA 49177 Query 138468 TCTATGTTGCCATCA---TCATCACACTTGACACCTACAACTTTCATTCCTGCCATGACT 138524 || | ||| ||| | ||||||||||| | ||||| ||| ||||||||| | Sbjct 49176 TCCAAGTTTCCAGTAGTGGTATCACACTTGATAGGAACAACACGCATACCTGCCATGGCA 49117 Query 138525 GCACTAGCAGGATTAGTTCCATGTGCTGACTCTGGTATCAGACATACATTTCTTTTATCA 138584 || ||||| || |||||||| || || | || |||| ||| | || | ||| | Sbjct 49116 GCTGAGGCAGGGTTGGTTCCATGGGCAGAGACAGGAATCAAACAGATATCACGTTTCTTG 49057 Query 138585 TCTCCTGATCCTTGATGATATGCTTGGATTGCTAACAGTCCTGCATACTCACCCTGTGAT 138644 |||| | | | |||||| ||||| || || || ||| |||| || || | Sbjct 49056 CCTCCATTTTCCTCATGATAGCGGTGGATAGCACGAAGACCAGCAAACTCGCCTTGGGCA 48997 Query 138645 CCTGCGTTAGGTTGTA 138660 || | |||||| |||| Sbjct 48996 CCAGAGTTAGGCTGTA 48981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578989620936760