Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20platani_20[genbank_20GCA_5F000978885.1_202015-04-23] 1,213 sequences; 29,181,415 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq411 138 1e-27 seq101 111 2e-19 seq76 84.2 3e-11 >seq411 Length=11963 Score = 138 bits (152), Expect = 1e-27 Identities = 1038/1651 (63%), Gaps = 55/1651 (3%) Strand=Plus/Plus Query 75305 TTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGT 75364 |||| ||||||| |||| || ||||| ||||| ||||| || | ||| |||| Sbjct 6727 TTCACTCACGCATCACCTACGCTCTTTAATGCCGGTACTCCCCAGGCTCAGTTGTCTTCA 6786 Query 75365 TGCTTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAG 75424 || ||||| ||| || ||||| ||| ||| | || || || | || || | | Sbjct 6787 TGTTTCCTAGTCGACATGAAGGATGACAGCATCGAGGGCATTTACGATACCCTCAAGACT 6846 Query 75425 TGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCC 75484 ||||| || || ||| |||||| ||||| || | | | || | | | ||| Sbjct 6847 TGTGCCATGATTTCCAAGATGGCTGGTGGTATCGGTCTCAATGTTCACCGTATTCGTGCC 6906 Query 75485 AATAAATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGC 75544 | | ||| ||| || || || ||| || | || || |||| ||||| || Sbjct 6907 ACTGGCTCTTACATTGCTGGCACTAACGGTACTTCGAACGGCATCGTTCCCATGCTACGT 6966 Query 75545 GTATTTAACGCCACAGCGCGCTATGTAAATCAAGCGGGGCGTCGCAAG------GGGTCC 75598 || || ||| ||| || || ||||| | || ||| | |||| || || Sbjct 6967 GTTTTCAACAACACCGCCCGTTATGTTGACCA---GGGTGGAAACAAGCGACCTGGAGCC 7023 Query 75599 ATCGCGGTCTACTTGGAACCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTC 75658 | || | || | || ||||||||||| ||| || | |||||||| || ||||| Sbjct 7024 TTTGCCATTTATCTCGAGCCATGGCATGCTGATGTCTTCGAGTTCCTCGACTTACGCAAG 7083 Query 75659 AACCAAGGTGACGAAGAGGCTCGGTG-TAGAGATCTCTTTTCATCCCTGTGGATTCCAGA 75717 ||||| || | ||||| | || ||| | | || || || | |||||||||| || Sbjct 7084 AACCACGGAAAGGAAGAAG-TCCGTGCTCGTGACCTATTCTTGGCCCTGTGGATCTGCGA 7142 Query 75718 CCTTTTCATGAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGAC-AAGG 75776 | | ||||||||||| |||||| || || | ||| |||| | || || | || | Sbjct 7143 CTTGTTCATGAAGCGTGTTGAGAAGAATGAGGACTGGACTCTCATGTGCCCCAATGAATG 7202 Query 75777 CACCAGGTCTCTCCGAC-GCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAA 75835 | || | | | | || || ||| || |||||||| || || || |||||| || Sbjct 7203 CCCCGGCT-TGGCGGATTGCTATGGC-GAAGAGTTTGAGGCTCTGTATGAAAAGTACGAG 7260 Query 75836 GAGGAGGGTAGAG--CCAATGCGACTGTACCAGCCGCCGATGTT-TGGAAGGCTATTCTC 75892 ||||||| | | | ||| ||| | || | | || | ||| | || ||||| Sbjct 7261 AAGGAGGGCCGCGGTCGCATGGT--TGT-CAAGGCCCAGAAACTGTGGTATGCCATTCTG 7317 Query 75893 AAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAG 75952 | | ||||| |||||||| | || | |||||| ||||| || || ||| ||| Sbjct 7318 GAGGCTCAGACTGAGACTGGCAACCCTTTTATGCTCTACAAAGACCACTGCAACCGCAAG 7377 Query 75953 AGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAG 76012 || || || || ||| | || || || || || || || ||||| || ||| | ||| Sbjct 7378 AGCAATCAGAAAAATCTAGGTACCATTCGCAGTTCGAACCTGTGCACTGAGATTATCGAG 7437 Query 76013 TACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTAT 76072 ||| | |||||| ||||| ||||| | ||||| |||||||||| | Sbjct 7438 TACTGTGCCCCTGATGAGGTCGCTGTGTGCAACCTAGCATCTCTCGCCCTTCCTTCCTTC 7497 Query 76073 GTCAATGAAGAGACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTT 76132 || | | | | | | ||| | | |||| || || ||| |||| | ||||| Sbjct 7498 GTGGACTACAACAAGGGTGAGTATGACTTTAAAAAGCTACACGAAGTCACCCAAGTTGTT 7557 Query 76133 ACCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAG 76192 || |||||||| |||| || ||| || || || || || | || Sbjct 7558 GTTCGCAACCTAAACCGCATCATCGATGTGAATCACTACCCTGTCCAGGAAGCTCACAAC 7617 Query 76193 TCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATT 76252 || ||||| ||| | || |||||| | ||||| || || || || || | || || Sbjct 7618 AGCAACATGCGCCACCGTCCCATTGGTGTCGGTGTACAGGGCCTGGCTGACGCTTTCCTT 7677 Query 76253 TTGTGCCGCTACGCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAA 76312 |||| | ||||| || |||||| || | || | || |||||| Sbjct 7678 GCTCTCCGCATGCCTTTTGAATCCCCTGAAGCACGCCAGCTCAACAAGCAGATTTTTGAA 7737 Query 76313 ACCATGTATCACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTAT 76372 ||||| || ||||| | || || ||| | || | | | ||| | || Sbjct 7738 ACCATCTACCACGCCGCACTAACTGCTTCAATGGAAATCGCCCAGACGGAGGGTACTTAC 7797 Query 76373 GAGACATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGT 76432 || | |||||||||||| | |||||||| | | |||||||||||||||| | || Sbjct 7798 TCAACTTATGAGGGTTCTCCTGTCTCCCAAGGCATCTTGCAGTTTGATATGTGGG-ATGT 7856 Query 76433 GAAACCAAGCTCAAC--TACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTC 76490 || || || | | | | |||||| | ||| ||||| || ||| || | ||| Sbjct 7857 GACTCCTAG-TGACCTGTGGGACTGGACTTCTCTAAAGGAGAAGATTAAGCAGCATGGTG 7915 Query 76491 TTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTA 76550 | || || |||| | | ||||| ||||| |||||| ||| | || || ||||| | Sbjct 7916 TACGCAATTCTCTTCTAGTTGCACCCATGCCTACAGCCAGCACGTCGCAGATTTTGGGCA 7975 Query 76551 ATAATGAATGCTTTGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTG 76610 | ||||| ||||| ||||| |||||| | ||||| |||| | | | || || || | Sbjct 7976 ACAATGAGTGCTTCGAACCGTACACATCCAACATTTACCAGCGCCGCGTTCTTGCTGGCG 8035 Query 76611 AGTTTGTCATTGTCAACAAGCACCT--CGTCAA--TGACCTCAAGAAGA--TTGGTCTCT 76664 |||| | ||||| | ||| | || | |||||| || || ||||| | | Sbjct 8036 AGTTCCAGGTCGTCAA----CCCCTGGCTTCTACGTGACCT--AGTCGATCTTGGTTTAT 8089 Query 76665 GGTCCAAGGATATGAAGGATCTCATGGTGAAAGCGG---GTGGTTCCATTCAAAATATCT 76721 |||| | | |||||| ||| || | | |||| ||| ||||| || || |||| Sbjct 8090 GGTCTGACAACATGAAGAATCGCA---TTATTGCGGACAATGGCTCCATCCAGAACATCT 8146 Query 76722 CAGATATCCCAGATGATATCAAGAATCTCTACCGCACAGTGTGGGAAAT---CAAGATGA 76778 | || || | |||||| || ||| ||| || || ||||| || | || | Sbjct 8147 CTAGCATTCCTGCTGATATTAAAGCTCTGTACAAGACCGTTTGGGAGATTTCCCAGCGTA 8206 Query 76779 AAGATGTCATTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGA 76838 || || | | ||||| || ||||||||| |||||||| ||| || ||| | Sbjct 8207 CAGTTG---TGCAAATGGCTGCTGATCGTGGTGCTTTCATTGACCAA--TCGCAGTCTCT 8261 Query 76839 ATCTATT--CATGGAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCA-TATGTACGCGT 76895 | ||| |||| || ||| || ||| |||| || | ||||| | || || | Sbjct 8262 AAACATTCACATGAAAGATCCCACCATGGGCAAGATCACCAGCATGCACTTTGCTGGC-T 8320 Query 76896 GGAAACAGGGGCTCAAAACCGGAATGTACTA 76926 |||||| || ||||| || || |||||||| Sbjct 8321 GGAAACTAGGTCTCAAGACGGGCATGTACTA 8351 >seq101 Length=72697 Score = 111 bits (122), Expect = 2e-19 Identities = 340/520 (65%), Gaps = 7/520 (1%) Strand=Plus/Minus Query 64714 TGGACTGCGGAAGAAGTTGATTTGTCCAAAGATCTTGACGACTGGAAGACCC---TGAAT 64770 |||||||| || || ||||| | || || ||||| |||||||||| | || |||| Sbjct 41519 TGGACTGCTGAGGAGATTGATCTCTCTAAGGATCTCCACGACTGGAACAACCGTCTGAAC 41460 Query 64771 GAAAATGAAAAGAAATTCATAAAGTACATCCTGGCATTCTTTGCTGGGTCCGATGGAATT 64830 || | || || | ||||| |||| || || |||||||||| || ||||| || Sbjct 41459 AAAGACGAGCAGTACTTCATCTCCCACATTCTTGCCTTCTTTGCTGCCTCTGATGGCATC 41400 Query 64831 GTTTTTGAGAATATCAATAACAATTTTGCGGATGAAGTGCAGATAAGCGAAGCGCGCTCA 64890 || || ||| || | | || | | || |||||||| ||| || |||| Sbjct 41399 GTCAACGAAAATCTCGTTGAGCGCTTCTCAGGCGAGGTGCAGATCCCCGAGGCCCGCTGC 41340 Query 64891 TTCTACGCATATCAATGCCATAATG-AAATGGTTCATGGCGAAACATATTCAAAATTGAT 64949 ||||||| | || | ||| ||| ||| | || ||||| || || |||| Sbjct 41339 TTCTACGGTT-TCCAGATCATGATGGAAAACATCCACTCTGAAACCTACTCGCTGCTGAT 41281 Query 64950 TGACAAATACATTAAGGATGGATCTGAAAAGAAGCAGTTATTTGAAGCCATCCAAACTGT 65009 ||||| ||||| ||||| || || | | | || | ||||| | ||| | Sbjct 41280 TGACACCTACATCAAGGAGCCCTCGCAACGCACATACCTGTTCAATGCCATTGACACTAT 41221 Query 65010 ACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGAC-ACAAAGTCTCGCT 65068 || || || ||||| | ||||| |||| ||| | | |||| | ||| Sbjct 41220 TCCCTGCATCCGCCGCAAGGCCGACTGGGCTCTGAAGTGGATCACCGACAAGGAGTCGA- 41162 Query 65069 CCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCAT 65128 | || ||| ||||||| |||| ||||| ||| ||||| ||||| ||||| || | | Sbjct 41161 CGTTTGCCCAGCGCCTAGTTGCCTTTGCTGCTGTCGAGGGCATCTTTTTCTCAGGCGCCT 41102 Query 65129 TCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATG 65188 || | | || | ||| || ||||| ||||||||||| || || ||||||||| | Sbjct 41101 TCGCCTCCATCTTCTGGCTGCGCAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCAAACG 41042 Query 65189 AACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC 65228 | |||||||| || |||||||| || ||| || ||||| Sbjct 41041 AGCTTATTTCTCGTGATGAGGGCCTGCACACCGACTTTGC 41002 >seq76 Length=97792 Score = 84.2 bits (92), Expect = 3e-11 Identities = 186/274 (68%), Gaps = 10/274 (4%) Strand=Plus/Plus Query 175231 GAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGT---GGTGCCAAGATC 175287 ||| ||||| | || |||||| | ||||| | | |||| || |||||||||||| Sbjct 15158 GAGTTTGTGCAGTTCCTCAAGAAGCCCGAAA---AGTTTGTGCGTCTGGGTGCCAAGATC 15214 Query 175288 CCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCC 175347 || || ||||| | || |||| || || ||||| ||||| || || ||| ||| Sbjct 15215 CCGCGCGGCGCTATCCTATCGGGCCCTCCGGGAACGGGCAAGACGCTGCTAGCCAAGGCC 15274 Query 175348 ATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAA--ACTTTGTGGAGA 175405 | || || || ||| || || ||| || || | || || || | ||||| |||| Sbjct 15275 ACGGCTGGCGAGTCAGGCGTTCCGTTCTTC-AGCG-TCAGCGGCTCCGAGTTTGTCGAGA 15332 Query 175406 TGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATC 175465 ||||||| || |||||| | | || || ||||| |||| | || ||| | || Sbjct 15333 TGTTTGTCGGCGTGGGTCCGTCGCGTGTGCGTGATCTTTTTGCTACGGCGCGCAAGAACG 15392 Query 175466 AACCATGTATTGTCTTCATTGATGAGATTGATGC 175499 ||||| || | || ||||| ||||||||||| Sbjct 15393 CGCCATGCATCATTTTTATTGACGAGATTGATGC 15426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596560554513440