Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20platani_20[genbank_20GCA_5F000978885.1_202015-04-23]
1,213 sequences; 29,181,415 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq11 122 3e-22
seq66 89.7 2e-12
>seq11
Length=392749
Score = 122 bits (134), Expect = 3e-22
Identities = 196/277 (71%), Gaps = 10/277 (4%)
Strand=Plus/Plus
Query 302572 TCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCT 302631
||||| | | ||||| || |||||| || || || || ||| || ||| || |||||
Sbjct 51845 TCTTCTAAAGCCTTGACTAGACGACGTTGGATGTAGCCGGTTTCAGCTGTCTTCACAGCA 51904
Query 302632 GTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTA-- 302689
|| ||||| ||||| |||||||| |||| |||||||| || | || || |||
Sbjct 51905 GTGTCAATGAGACCTTCACGACCAGCCATGGCATGGAAAAAGAATTCGCTAGGA-GTAAG 51963
Query 302690 GCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGG 302749
||| | ||| | |||| ||||||| || ||||| || || || |||| ||| |||||
Sbjct 51964 GCCACGCAAGTA-GGAGTTCTCAACAAATCCACGAGCTTCAGGGGAATAATCGTCCTTGG 52022
Query 302750 TAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCT 302809
| || || ||||| |||| || | | || | || ||||||||||| ||||| | |
Sbjct 52023 TGAAATGAGGCAGAGTCCGGTATTTGAACCCAAAAGGAATACGCTTTCCTTCAACAATTT 52082
Query 302810 GCTGTC---CCAGGCACGAAATCATCTGCGAAATATT 302843
|||| | |||| || ||||||||||||| ||
Sbjct 52083 GCTGACCGACCAGAGCCG---TCATCTGCGAAATGTT 52116
Score = 86.0 bits (94), Expect = 2e-11
Identities = 117/163 (72%), Gaps = 8/163 (5%)
Strand=Plus/Minus
Query 251482 GATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCG 251541
|| || |||| | ||||| ||||||||||||||| ||||| | ||| |||||||| |||
Sbjct 337594 GAGGCTCCGTAGGCAATCAAACAATCACGCTCCATCTCACCCAGACGCAGACCACCCTCG 337535
Query 251542 CGAGCCCTACCCTCGGCAGGCTGACG----AGTGAGATTAACCATAGGACCGATGGAGCG 251597
|| | |||||||| | |||||||| |||||| | | ||||| | || ||
Sbjct 337534 CGCGATCTACCCTCAGTGGGCTGACGGGTCAGTGAGGCTCGC----GGACCCGTTGATCG 337479
Query 251598 GCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAG 251640
|| ||| || | ||||| |||||||||||||| |||
Sbjct 337478 CGAGTGCATCTTGTCCTGCACCATGTGCTTGAGACGCTGATAG 337436
>seq66
Length=168719
Score = 89.7 bits (98), Expect = 2e-12
Identities = 118/164 (72%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466
|| |||||||| | | ||| | || || | | | ||||| || | ||| | | |||
Sbjct 20175 ATCAGACCACAAATCTCACAAATGTGCACTCGGAAGGCATCCGAAACCTCAAACAACCGC 20116
Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526
|||| ||| | |||||| || | ||||||||||||||| |||||||| ||||||
Sbjct 20115 TCCTTCAAGAACGCTGCTGCACCATGGGCAATCATACAATCACGTTCCATTTCTCCGAAA 20056
Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGT 251570
|| | ||||||||| ||||| | ||| || | ||||| || ||
Sbjct 20055 CGCAAACCACCATCACGAGCACGACCTTCAACTGGCTGTCGCGT 20012
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471794725654781
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |