Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20platani_20[genbank_20GCA_5F000978885.1_202015-04-23] 1,213 sequences; 29,181,415 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq11 122 3e-22 seq66 89.7 2e-12 >seq11 Length=392749 Score = 122 bits (134), Expect = 3e-22 Identities = 196/277 (71%), Gaps = 10/277 (4%) Strand=Plus/Plus Query 302572 TCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCT 302631 ||||| | | ||||| || |||||| || || || || ||| || ||| || ||||| Sbjct 51845 TCTTCTAAAGCCTTGACTAGACGACGTTGGATGTAGCCGGTTTCAGCTGTCTTCACAGCA 51904 Query 302632 GTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTA-- 302689 || ||||| ||||| |||||||| |||| |||||||| || | || || ||| Sbjct 51905 GTGTCAATGAGACCTTCACGACCAGCCATGGCATGGAAAAAGAATTCGCTAGGA-GTAAG 51963 Query 302690 GCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGG 302749 ||| | ||| | |||| ||||||| || ||||| || || || |||| ||| ||||| Sbjct 51964 GCCACGCAAGTA-GGAGTTCTCAACAAATCCACGAGCTTCAGGGGAATAATCGTCCTTGG 52022 Query 302750 TAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCT 302809 | || || ||||| |||| || | | || | || ||||||||||| ||||| | | Sbjct 52023 TGAAATGAGGCAGAGTCCGGTATTTGAACCCAAAAGGAATACGCTTTCCTTCAACAATTT 52082 Query 302810 GCTGTC---CCAGGCACGAAATCATCTGCGAAATATT 302843 |||| | |||| || ||||||||||||| || Sbjct 52083 GCTGACCGACCAGAGCCG---TCATCTGCGAAATGTT 52116 Score = 86.0 bits (94), Expect = 2e-11 Identities = 117/163 (72%), Gaps = 8/163 (5%) Strand=Plus/Minus Query 251482 GATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCG 251541 || || |||| | ||||| ||||||||||||||| ||||| | ||| |||||||| ||| Sbjct 337594 GAGGCTCCGTAGGCAATCAAACAATCACGCTCCATCTCACCCAGACGCAGACCACCCTCG 337535 Query 251542 CGAGCCCTACCCTCGGCAGGCTGACG----AGTGAGATTAACCATAGGACCGATGGAGCG 251597 || | |||||||| | |||||||| |||||| | | ||||| | || || Sbjct 337534 CGCGATCTACCCTCAGTGGGCTGACGGGTCAGTGAGGCTCGC----GGACCCGTTGATCG 337479 Query 251598 GCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAG 251640 || ||| || | ||||| |||||||||||||| ||| Sbjct 337478 CGAGTGCATCTTGTCCTGCACCATGTGCTTGAGACGCTGATAG 337436 >seq66 Length=168719 Score = 89.7 bits (98), Expect = 2e-12 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466 || |||||||| | | ||| | || || | | | ||||| || | ||| | | ||| Sbjct 20175 ATCAGACCACAAATCTCACAAATGTGCACTCGGAAGGCATCCGAAACCTCAAACAACCGC 20116 Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526 |||| ||| | |||||| || | ||||||||||||||| |||||||| |||||| Sbjct 20115 TCCTTCAAGAACGCTGCTGCACCATGGGCAATCATACAATCACGTTCCATTTCTCCGAAA 20056 Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGT 251570 || | ||||||||| ||||| | ||| || | ||||| || || Sbjct 20055 CGCAAACCACCATCACGAGCACGACCTTCAACTGGCTGTCGCGT 20012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471794725654781