Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20platani_20[genbank_20GCA_5F000978885.1_202015-04-23] 1,213 sequences; 29,181,415 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq184 147 3e-29 seq97 132 6e-25 seq101 129 7e-24 seq411 107 2e-17 seq15 91.5 2e-12 >seq184 Length=28646 Score = 147 bits (162), Expect = 3e-29 Identities = 274/401 (68%), Gaps = 6/401 (1%) Strand=Plus/Plus Query 18096 CTTTGGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGCGTGCCGCCGTGCAT 18155 |||||| ||||||||||| || ||||||||||||||| ||| | |||||| || | Sbjct 22431 CTTTGGTGAGTCGCACGGCAAGGCCGTCGGCTGCATCATTGACAACCCGCCGCCTGGCCT 22490 Query 18156 GCCACTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGC 18215 | || |||| || ||||||||||||||| || ||| || |||| |||||| | | Sbjct 22491 TTCCCTAACCGAAGCTGACATCCAGCCTCAGCTGACTCGCCGGAGACCCGGCCAGAGTTC 22550 Query 18216 ACTTTCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAACGG 18275 || | || |||||||| || || || || | || | ||||||| ||| ||| Sbjct 22551 GATTACAACACCGCGCAATGAAAAGGACCGTGTGACGATTCTGTCGGGCTGCGAGTTCGG 22610 Query 18276 CCTCACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGA 18335 || ||| || ||| | ||| | | || || ||| |||||||||||| || Sbjct 22611 CCGCACTCTAGGCACTCCCATTGCTCTGAGCGTTAACAATGAAGACCAGCGGCCCCGTGA 22670 Query 18336 CT-----ATTCCGAC-ATGTGCAAGGTGCCGCGGCCCTCACACGCCGACTACACCTACAT 18389 | | | ||| ||| |||| || |||||||| || || || | ||| ||| | Sbjct 22671 TTACGGAAACCAGACTATGGACAAGTACCCCCGGCCCTCGCATGCTGATTTCACGTACCT 22730 Query 18390 GGCCAAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTCTGCCCGCGAGACCCT 18449 || || ||| |||||||||| ||||| || || |||||| ||| || ||||| | Sbjct 22731 GGAAAAATACAGCATCAAGGCATCGTCAGGAGGCGGCCGGAGTAGTGCGCGTGAGACTAT 22790 Query 18450 CATGCGCGTCGCCGCCGGCGCGGTCGCCGAGAAATGGCTCG 18490 |||||| || ||||| ||||| || || || | |||| Sbjct 22791 TGCGCGCGTGGCTGCCGGTGCGGTGGCTGAAAAGTTCCTCG 22831 Score = 91.5 bits (100), Expect = 2e-12 Identities = 109/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 19052 CATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAGCCGTG 19111 || ||| ||||| || || ||||| ||||||||||| | || || || |||||| Sbjct 23064 CACCGGTGGCACTGTCACTTGCGTTATCCGCAACGTGCCCACGGGTCTTGGTGAGCCGGC 23123 Query 19112 CTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACCAAGGG 19171 |||||| ||| | |||||| ||| || || || |||||| ||||| ||| ||||| Sbjct 23124 CTTTGATAAGCTGGAGGCCAAGCTGGCTCATGCTATGCTGAGCATCCCCGCCTGCAAGGC 23183 Query 19172 ATTCGAGATTGGCAGCGGGTTTGCGGGT 19199 |||||||||||| || ||||| ||| Sbjct 23184 CTTCGAGATTGGCTCGGGATTTGCCGGT 23211 >seq97 Length=94121 Score = 132 bits (146), Expect = 6e-25 Identities = 94/108 (87%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 ||| ||||||| || || |||||||| ||||||||| |||| |||||| |||| |||||| Sbjct 30536 GCCTCCAACTATCTTGATATCAAGCCCCTGCTCGATGTTGGCTGCAAGACTGTCGCCAAC 30477 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATC 1592293 |||||||||||||| || ||||| || |||||||||||||| |||||| Sbjct 30476 ATGATCAAGGGCAAATCTCCCGAAGAAATCCGCAAGACCTTCAACATC 30429 >seq101 Length=72697 Score = 129 bits (142), Expect = 7e-24 Identities = 186/258 (72%), Gaps = 11/258 (4%) Strand=Plus/Plus Query 869210 AAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCC 869269 |||| || || |||||||| || ||||| ||||| ||||||| | ||| ||| Sbjct 41050 AAGGTCAGACCAGGCATGAGACCACGCTTGCGCAGCCAGAAGATGGAGGCGAAGGCGCCT 41109 Query 869270 GAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGG 869329 |||||||||||||||||||| || |||||| | | || |||| |||||| ||||| Sbjct 41110 GAGAAAAAGATGCCCTCGACAGCAGCAAAGGCAACTAGGCGCTGGGCAAA--CGTCGA-- 41165 Query 869330 CCCTCCTTGT---TGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACC 869386 |||||||| |||||||||||| |||||||||||||| | | | || | Sbjct 41166 --CTCCTTGTCGGTGATCCACTTCAGAGCCCAGTCGGCCTTGCGGCGGATGCAGGGAATA 41223 Query 869387 GTGTCGATGGCGCGAAAGAGGT-GGTCCTTTTCGGCCGGGTCCTTGACATAGGTGTCGAT 869445 ||||| ||||| || |||| || | || | | || ||||||| |||||||| || Sbjct 41224 GTGTCAATGGCATTGAACAGGTATGTGCGTTGC-GAGGGCTCCTTGATGTAGGTGTCAAT 41282 Query 869446 CAGGAGCGAATAGGTCTC 869463 ||| ||||| ||||| || Sbjct 41283 CAGCAGCGAGTAGGTTTC 41300 >seq411 Length=11963 Score = 107 bits (118), Expect = 2e-17 Identities = 211/312 (68%), Gaps = 0/312 (0%) Strand=Plus/Minus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 |||||| || || || || |||| ||| || || || |||||||| |||| |||||| || Sbjct 6999 CTGGTCAACATAACGGGCGGTGTTGTTGAAAACACGTAGCATGGGAACGATGCCGTTCGA 6940 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 ||||| ||||| || | ||| | ||| | ||| || | ||| | | || Sbjct 6939 AGTACCGTTAGTGCCAGCAATGTAAGAGCCAGTGGCACGAATACGGTGAACATTGAGACC 6880 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 ||| || || ||| |||||| || | || || ||||| || ||||| |||||||| Sbjct 6879 GATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAAATGCCCTC 6820 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 ||| ||| |||||||||| || || || || || || || | || | || || Sbjct 6819 GATGCTGTCATCCTTCATGTCGACTAGGAAACATGAAGACAACTGAGCCTGGGGAGTACC 6760 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 ||| || |||||||| || | || ||||| |||| | ||||| || |||||| Sbjct 6759 GGCATTAAAGAGCGTAGGTGATGCGTGAGTGAAGAACTTGCTAGACATAAGGTTGTAGGT 6700 Query 1630365 GGCGAGCACGCG 1630376 | ||||| || Sbjct 6699 TTCAAGCACACG 6688 >seq15 Length=81709 Score = 91.5 bits (100), Expect = 2e-12 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 1574067 GGACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAG 1574126 || || |||||| | || ||||||||||| || || | | | || || | |||||||| Sbjct 50748 GGCCGACACAAGCTCATTATCCTCGACGAAGCTGATTCCATGACCTCAGGCGCCCAGCAA 50807 Query 1574127 GCCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAAC 1574186 ||||| || || ||||| | || ||||||| || ||||| || | || |||||| Sbjct 50808 GCCCTCCGCAGAACTATGGAGATCTACTCCAACACTACACGCTTCGCGTTTGCATGCAAC 50867 Query 1574187 ACGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGCTGCGCCATTCTGCGCTTTGTGCGC 1574246 ||| | | |||| ||| | ||||| || |||||||||||||||| || ||| Sbjct 50868 CAGTCCAACAAGATCATTGAGCCGCTCCAGTCCCGATGCGCCATTCTGCGCTATGGGCGG 50927 Query 1574247 CTGGGTGACG 1574256 || ||||| Sbjct 50928 CTAACTGACG 50937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107039655539521