Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20platani_20[genbank_20GCA_5F000978885.1_202015-04-23]
1,213 sequences; 29,181,415 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq184 147 3e-29
seq97 132 6e-25
seq101 129 7e-24
seq411 107 2e-17
seq15 91.5 2e-12
>seq184
Length=28646
Score = 147 bits (162), Expect = 3e-29
Identities = 274/401 (68%), Gaps = 6/401 (1%)
Strand=Plus/Plus
Query 18096 CTTTGGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGCGTGCCGCCGTGCAT 18155
|||||| ||||||||||| || ||||||||||||||| ||| | |||||| || |
Sbjct 22431 CTTTGGTGAGTCGCACGGCAAGGCCGTCGGCTGCATCATTGACAACCCGCCGCCTGGCCT 22490
Query 18156 GCCACTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGC 18215
| || |||| || ||||||||||||||| || ||| || |||| |||||| | |
Sbjct 22491 TTCCCTAACCGAAGCTGACATCCAGCCTCAGCTGACTCGCCGGAGACCCGGCCAGAGTTC 22550
Query 18216 ACTTTCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAACGG 18275
|| | || |||||||| || || || || | || | ||||||| ||| |||
Sbjct 22551 GATTACAACACCGCGCAATGAAAAGGACCGTGTGACGATTCTGTCGGGCTGCGAGTTCGG 22610
Query 18276 CCTCACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGA 18335
|| ||| || ||| | ||| | | || || ||| |||||||||||| ||
Sbjct 22611 CCGCACTCTAGGCACTCCCATTGCTCTGAGCGTTAACAATGAAGACCAGCGGCCCCGTGA 22670
Query 18336 CT-----ATTCCGAC-ATGTGCAAGGTGCCGCGGCCCTCACACGCCGACTACACCTACAT 18389
| | | ||| ||| |||| || |||||||| || || || | ||| ||| |
Sbjct 22671 TTACGGAAACCAGACTATGGACAAGTACCCCCGGCCCTCGCATGCTGATTTCACGTACCT 22730
Query 18390 GGCCAAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTCTGCCCGCGAGACCCT 18449
|| || ||| |||||||||| ||||| || || |||||| ||| || ||||| |
Sbjct 22731 GGAAAAATACAGCATCAAGGCATCGTCAGGAGGCGGCCGGAGTAGTGCGCGTGAGACTAT 22790
Query 18450 CATGCGCGTCGCCGCCGGCGCGGTCGCCGAGAAATGGCTCG 18490
|||||| || ||||| ||||| || || || | ||||
Sbjct 22791 TGCGCGCGTGGCTGCCGGTGCGGTGGCTGAAAAGTTCCTCG 22831
Score = 91.5 bits (100), Expect = 2e-12
Identities = 109/148 (74%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 19052 CATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAGCCGTG 19111
|| ||| ||||| || || ||||| ||||||||||| | || || || ||||||
Sbjct 23064 CACCGGTGGCACTGTCACTTGCGTTATCCGCAACGTGCCCACGGGTCTTGGTGAGCCGGC 23123
Query 19112 CTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACCAAGGG 19171
|||||| ||| | |||||| ||| || || || |||||| ||||| ||| |||||
Sbjct 23124 CTTTGATAAGCTGGAGGCCAAGCTGGCTCATGCTATGCTGAGCATCCCCGCCTGCAAGGC 23183
Query 19172 ATTCGAGATTGGCAGCGGGTTTGCGGGT 19199
|||||||||||| || ||||| |||
Sbjct 23184 CTTCGAGATTGGCTCGGGATTTGCCGGT 23211
>seq97
Length=94121
Score = 132 bits (146), Expect = 6e-25
Identities = 94/108 (87%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245
||| ||||||| || || |||||||| ||||||||| |||| |||||| |||| ||||||
Sbjct 30536 GCCTCCAACTATCTTGATATCAAGCCCCTGCTCGATGTTGGCTGCAAGACTGTCGCCAAC 30477
Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATC 1592293
|||||||||||||| || ||||| || |||||||||||||| ||||||
Sbjct 30476 ATGATCAAGGGCAAATCTCCCGAAGAAATCCGCAAGACCTTCAACATC 30429
>seq101
Length=72697
Score = 129 bits (142), Expect = 7e-24
Identities = 186/258 (72%), Gaps = 11/258 (4%)
Strand=Plus/Plus
Query 869210 AAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCC 869269
|||| || || |||||||| || ||||| ||||| ||||||| | ||| |||
Sbjct 41050 AAGGTCAGACCAGGCATGAGACCACGCTTGCGCAGCCAGAAGATGGAGGCGAAGGCGCCT 41109
Query 869270 GAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGG 869329
|||||||||||||||||||| || |||||| | | || |||| |||||| |||||
Sbjct 41110 GAGAAAAAGATGCCCTCGACAGCAGCAAAGGCAACTAGGCGCTGGGCAAA--CGTCGA-- 41165
Query 869330 CCCTCCTTGT---TGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACC 869386
|||||||| |||||||||||| |||||||||||||| | | | || |
Sbjct 41166 --CTCCTTGTCGGTGATCCACTTCAGAGCCCAGTCGGCCTTGCGGCGGATGCAGGGAATA 41223
Query 869387 GTGTCGATGGCGCGAAAGAGGT-GGTCCTTTTCGGCCGGGTCCTTGACATAGGTGTCGAT 869445
||||| ||||| || |||| || | || | | || ||||||| |||||||| ||
Sbjct 41224 GTGTCAATGGCATTGAACAGGTATGTGCGTTGC-GAGGGCTCCTTGATGTAGGTGTCAAT 41282
Query 869446 CAGGAGCGAATAGGTCTC 869463
||| ||||| ||||| ||
Sbjct 41283 CAGCAGCGAGTAGGTTTC 41300
>seq411
Length=11963
Score = 107 bits (118), Expect = 2e-17
Identities = 211/312 (68%), Gaps = 0/312 (0%)
Strand=Plus/Minus
Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124
|||||| || || || || |||| ||| || || || |||||||| |||| |||||| ||
Sbjct 6999 CTGGTCAACATAACGGGCGGTGTTGTTGAAAACACGTAGCATGGGAACGATGCCGTTCGA 6940
Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184
||||| ||||| || | ||| | ||| | ||| || | ||| | | ||
Sbjct 6939 AGTACCGTTAGTGCCAGCAATGTAAGAGCCAGTGGCACGAATACGGTGAACATTGAGACC 6880
Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244
||| || || ||| |||||| || | || || ||||| || ||||| ||||||||
Sbjct 6879 GATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAAATGCCCTC 6820
Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304
||| ||| |||||||||| || || || || || || || | || | || ||
Sbjct 6819 GATGCTGTCATCCTTCATGTCGACTAGGAAACATGAAGACAACTGAGCCTGGGGAGTACC 6760
Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364
||| || |||||||| || | || ||||| |||| | ||||| || ||||||
Sbjct 6759 GGCATTAAAGAGCGTAGGTGATGCGTGAGTGAAGAACTTGCTAGACATAAGGTTGTAGGT 6700
Query 1630365 GGCGAGCACGCG 1630376
| ||||| ||
Sbjct 6699 TTCAAGCACACG 6688
>seq15
Length=81709
Score = 91.5 bits (100), Expect = 2e-12
Identities = 134/190 (71%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 1574067 GGACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAG 1574126
|| || |||||| | || ||||||||||| || || | | | || || | ||||||||
Sbjct 50748 GGCCGACACAAGCTCATTATCCTCGACGAAGCTGATTCCATGACCTCAGGCGCCCAGCAA 50807
Query 1574127 GCCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAAC 1574186
||||| || || ||||| | || ||||||| || ||||| || | || ||||||
Sbjct 50808 GCCCTCCGCAGAACTATGGAGATCTACTCCAACACTACACGCTTCGCGTTTGCATGCAAC 50867
Query 1574187 ACGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGCTGCGCCATTCTGCGCTTTGTGCGC 1574246
||| | | |||| ||| | ||||| || |||||||||||||||| || |||
Sbjct 50868 CAGTCCAACAAGATCATTGAGCCGCTCCAGTCCCGATGCGCCATTCTGCGCTATGGGCGG 50927
Query 1574247 CTGGGTGACG 1574256
|| |||||
Sbjct 50928 CTAACTGACG 50937
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107039655539521
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |