Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20platani_20[genbank_20GCA_5F000978885.1_202015-04-23] 1,213 sequences; 29,181,415 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq411 122 8e-23 seq145 93.3 4e-14 seq64 86.0 6e-12 >seq411 Length=11963 Score = 122 bits (134), Expect = 8e-23 Identities = 560/884 (63%), Gaps = 27/884 (3%) Strand=Plus/Minus Query 138358 ATCTCCCACACGGTCTTGTATAGATCACGAATATGTCGCGGTATTGTTGCAATATTTTGA 138417 |||||||| ||||||||||| ||| | ||||| || || | | || || || Sbjct 8195 ATCTCCCAAACGGTCTTGTACAGAGCTTTAATATCAGCAGGAATGCTAGAGATGTTCTGG 8136 Query 138418 ATGCTCCCGTTGGCCGCAATGATGCGATTTCTCATGTCATCGTTGTACAGATTCAACTTG 138477 ||| || ||| ||||||| |||||||| |||||| || | | | | | | Sbjct 8135 ATGGAGCCATTGTCCGCAATAATGCGATTCTTCATGTTGTCAGACCATAAACCAAGATCG 8076 Query 138478 ATCAAGTCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGACGA 138537 | | ||| || || | ||| | |||||| || || || || | || || || Sbjct 8075 ACTAGGTCACGTAGAAGCCAGGGGTTGACGACCTGGAACTCGCCAGCAAGAACGCGGCGC 8016 Query 138538 ACGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTG 138597 |||||||||| ||| | || || || | || ||||| |||| |||||| | |||| Sbjct 8015 TGGTAAATGTTGGATGTGTACGGTTCGAAGCACTCATTGTTGCCCAAAATCTGCGACGTG 7956 Query 138598 GTCGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTCGT 138657 | || || |||||| || || | ||||||||| |||| ||| || |||| || Sbjct 7955 CTGGCTGTAGGCATGGGTGCAACTAGAAGAGAATTGCGTACACCATGCTGCTTAATCTTC 7896 Query 138658 TCCTTGAGCGACGACCAGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGTACTGT 138717 ||||| || || | ||||||||||| || ||||| | | ||||||||| |||| Sbjct 7895 TCCTTTAGAGAAGTCCAGTCCCACAGGTCACTAGGAGTCACATCCCACATATCAAACTGC 7836 Query 138718 AACATTCCCAAACTTGCGGGACTG-----CCTTCGTACGAATCGTATACACCAAACTCTT 138772 || || | |||| | ||| | || || || | ||| ||| | | Sbjct 7835 AAGATGC-----CTTGGGAGACAGGAGAACCCTCATAAGTTGAGTAAGTACCCTCCGTCT 7781 Query 138773 GCGCCAACTCGTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGAT 138832 | || | || | || || || | | ||| || ||||| |||||||| | Sbjct 7780 GGGCGATTTCCATTGAAGCAGTTAGTGCGGCGTGGTAGATGGTTTCAAAAATCTGCTTGT 7721 Query 138833 TGAGCAATCGGGCCTCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAACGCGTCGGCCA 138892 ||||| || || || | | || | ||||||||||| ||| ||||| |||| Sbjct 7720 TGAGCTGGCGTGCTTCAGGGGATTCAAAAGGCATGCGGAGAGCAAGGAAAGCGTCAGCCA 7661 Query 138893 GCCCTTGCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGCG-GCTTC- 138950 | || || || || || || | || || ||||||| || ||| ||| | ||||| Sbjct 7660 GGCCCTGTACACCGACACCAATGGGACGGTGGCGCA----TGTTGCTGTTGTGAGCTTCC 7605 Query 138951 --GATAGGATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACCTTAGTC 139008 || ||| || | || ||||||||||| ||||| || || || || || | || Sbjct 7604 TGGACAGGGTAGTGATTCACATCGATGATGCGGTTTAGGTTGCGAACAACAACTTGGGTG 7545 Query 139009 GTATGCTTTAATCGTTCAAAATCGTATGTGCCCCCGTTGTCGTCGACGACGTCGACAAAT 139068 | | || || ||| || || ||| ||||| ||| |||| | || | Sbjct 7544 ACTTCGTGTAGCTTTTTAAAGTCATACTCACCCTTGTTGTAGTCCACGAAG--GA-AGGA 7488 Query 139069 TTGTTGACACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCG 139128 | || | || |||| ||||||||| || || || || ||| | | ||| ||| Sbjct 7487 AGGGCGAGA------GATGCTAGGTTGCACACAGCGACCTCATCAGGGGCACAGTACTCG 7434 Query 139129 ACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTT 139188 | ||| || | |||| || || || ||||||| ||||| |||||||| || Sbjct 7433 ATAATCTCAGTGCACAGGTTCGAACTGCGAATGGTACCTAGATTTTTCTGATTGCTCTTG 7374 Query 139189 CGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTC 139232 ||||| || |||||||| |||||| | || ||||||| || Sbjct 7373 CGGTTGCAGTGGTCTTTGTAGAGCATAAAAGGGTTGCCAGTCTC 7330 >seq145 Length=91869 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || | || || || || ||||| || ||||| ||||| || || || | Sbjct 6210 GATGCAGATTTTCGTCAAGACCCTTACGGGTAAGACGATTACCCTCGAGGTTGAGTCCTC 6151 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || ||||| || ||||| || || || || || || || Sbjct 6150 GGACACCATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCGGACCA 6091 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || ||||||| || || || |||||||||||| | | | |||| || || || Sbjct 6090 GCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTGTCTGACTACAA 6031 Query 24883 CATTCAAAAGG 24893 |||||| |||| Sbjct 6030 CATTCAGAAGG 6020 >seq64 Length=146407 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACG 24778 || || || || ||||| || ||||| || || || || | | ||||| | || | Sbjct 70753 AAGACCCTGACGGGTAAGACCATTACCCTGGAGGTCGAGTCTTCGGACACGATCGACAAC 70812 Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838 || || |||||||| ||||| || || || || || || || || || ||||||||| Sbjct 70813 GTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCTTGATCTTT 70872 Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCG 24898 || || || ||||| |||||| | | |||| || || ||||| || ||||| || Sbjct 70873 GCTGGTAAGCAGCTTGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAAGGAGTCC 70932 Query 24899 ACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||| | || |||| |||| || || Sbjct 70933 ACCCTCCACCTTGTCCTGCGCCTGCGTGGTGG 70964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449890778427640