Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20platani_20[genbank_20GCA_5F000978885.1_202015-04-23]
1,213 sequences; 29,181,415 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq101 159 5e-33
seq97 118 2e-20
seq411 96.9 5e-14
>seq101
Length=72697
Score = 159 bits (176), Expect = 5e-33
Identities = 215/295 (73%), Gaps = 11/295 (4%)
Strand=Plus/Plus
Query 794377 AGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAA 794436
|| || |||||||| || ||||| ||||| ||||||| ||| ||| ||||||
Sbjct 41056 AGACCAGGCATGAGACCACGCTTGCGCAGCCAGAAGATGGAGGCGAAGGCGCCTGAGAAA 41115
Query 794437 AAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCT 794496
|||||||||||||| || |||||| | || || |||| |||||| || | | |||
Sbjct 41116 AAGATGCCCTCGACAGCAGCAAAGGCAACTAGGCGCTGGGCAAACGT--CGA----CTCC 41169
Query 794497 TTGT---TGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCG 794553
|||| |||||||||||| ||||| || ||||| | | |||| | |||||
Sbjct 41170 TTGTCGGTGATCCACTTCAGAGCCCAGTCGGCCTTGCGGCGGATGCAGGGAATAGTGTCA 41229
Query 794554 ATGGCGCGAAAGAGGTG-GTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAG 794612
||||| || |||| || | | ||| || ||||||| ||||||||| || || ||
Sbjct 41230 ATGGCATTGAACAGGTATGTGCGTTGCGAG-GGCTCCTTGATGTAGGTGTCAATCAGCAG 41288
Query 794613 CGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAGCAG 794667
||||||||| || |||||||||||||| || ||||||||| || || ||||||
Sbjct 41289 CGAGTAGGTTTCAGAGTGGATGTTTTCCATCATGATCTGGAAACCGTAGAAGCAG 41343
Score = 122 bits (134), Expect = 1e-21
Identities = 168/235 (71%), Gaps = 0/235 (0%)
Strand=Plus/Plus
Query 793908 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 793967
|| ||||| || ||| ||| || ||||| |||||||| |||||||||| ||||||
Sbjct 40714 TAGTCGCCGACACGCTTCTCAAAGAAGTTAGTCTTGCCGCCGAGCGAGATGTTCTCCATG 40773
Query 793968 CACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGG 794027
| ||| ||||| | | |||| ||||||| || || | |||| ||||||
Sbjct 40774 AAGTCGAATGGGTTTGTGGCACGGTACACCTTCTCGTTGCCTAGAGCAACAAGTAGGCGG 40833
Query 794028 TCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACG 794087
|| || || || ||||||||||| ||| || |||||||||| || | || | |
Sbjct 40834 TCAGCAACAAACTCAATGTACTGCTTCATCAGATCGGCGTTCATTCCTAGCAGACCGCAG 40893
Query 794088 GGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGATGATGATCT 794142
||||| | |||| | | ||||| ||||||||| ||||||| || |||||||||
Sbjct 40894 GGCAGAGCCTCGGTCAGGAACTCCTTCTCGATCACGACGGCATCAGTGATGATCT 40948
>seq97
Length=94121
Score = 118 bits (130), Expect = 2e-20
Identities = 91/108 (84%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706
||| ||||||| || || ||||||||||| |||||| | || |||||||| || ||||||
Sbjct 30536 GCCTCCAACTATCTTGATATCAAGCCCCTGCTCGATGTTGGCTGCAAGACTGTCGCCAAC 30477
Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATC 2035754
| ||||||||||| || ||||| || |||||||||||||| ||||||
Sbjct 30476 ATGATCAAGGGCAAATCTCCCGAAGAAATCCGCAAGACCTTCAACATC 30429
>seq411
Length=11963
Score = 96.9 bits (106), Expect = 5e-14
Identities = 176/258 (68%), Gaps = 0/258 (0%)
Strand=Plus/Minus
Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599
|||||| ||||| || || |||| ||| || || || |||||||| || | |||||| ||
Sbjct 6999 CTGGTCAACATAACGGGCGGTGTTGTTGAAAACACGTAGCATGGGAACGATGCCGTTCGA 6940
Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659
||||| ||||| || | ||| | ||| | ||| || | ||| | | ||
Sbjct 6939 AGTACCGTTAGTGCCAGCAATGTAAGAGCCAGTGGCACGAATACGGTGAACATTGAGACC 6880
Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719
||| || || ||| |||||| || | || || | || || || ||||| ||||||||
Sbjct 6879 GATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAAATGCCCTC 6820
Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779
||| ||| |||||||||| | || || || || || || | | | || ||
Sbjct 6819 GATGCTGTCATCCTTCATGTCGACTAGGAAACATGAAGACAACTGAGCCTGGGGAGTACC 6760
Query 2073780 GGCATTGAAGAGCGTGGG 2073797
|||||| |||||||| ||
Sbjct 6759 GGCATTAAAGAGCGTAGG 6742
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7916117367657507
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |