Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20platani_20[genbank_20GCA_5F000978885.1_202015-04-23]
1,213 sequences; 29,181,415 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq338 132 3e-26
seq145 118 7e-22
seq64 116 2e-21
>seq338
Length=64627
Score = 132 bits (146), Expect = 3e-26
Identities = 157/213 (74%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
||| |||| ||||| || ||||||||| ||||| ||||| || ||| |||| ||||
Sbjct 52027 CAGAACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATC 52086
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
|| || ||||||||||||||||| || || ||||| || | || | |||||||||||
Sbjct 52087 CTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCCGGAGGGATACCCTCCTTGTC 52146
Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944
| || || |||||| | || | ||| || |||||| || | ||| |||||
Sbjct 52147 CTGGATCTTGGATTTGACATTGTCAATGGTATCAGAGGACTCGACTTCGAGGGTAATGGT 52206
Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||| ||||| | |||||| || ||||| |||||
Sbjct 52207 CTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 52239
Score = 127 bits (140), Expect = 1e-24
Identities = 150/203 (74%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
|||||||| ||||| || || ||||||||||| ||||| || ||| |||| ||||
Sbjct 52483 CAGGACCAAGTGAAGAGTAGATTCTTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATC 52542
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
|| || ||||||||||||||||| || || |||||||| | || | |||||||||||
Sbjct 52543 CTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTGTC 52602
Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944
| || || |||||| | || | || || |||||| || | ||| |||||
Sbjct 52603 CTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAGGACTCGACTTCGAGGGTAATGGT 52662
Query 34945 CTTTCCCGTGAGGGTCTTTACAA 34967
|||||| || |||||||| ||||
Sbjct 52663 CTTTCCGGTAAGGGTCTTGACAA 52685
Score = 105 bits (116), Expect = 4e-18
Identities = 151/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
||| |||| ||||| || || ||||||||||| |||||||| ||| | || ||||
Sbjct 52255 CAGAACCAAGTGAAGAGTAGATTCTTTCTGAATGTTGTAGTCCGAAAGGGTACGGCCATC 52314
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
|| || |||||||| || || || || || ||||| || | || | |||||||| ||
Sbjct 52315 CTCGAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGATCCGGGGGGATACCCTCCTTATC 52374
Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944
| || || ||||| | || | ||| || |||||| || | ||| |||||
Sbjct 52375 CTGGATCTTGGACTTGACATTGTCAATGGTATCAGAGGACTCGACTTCGAGGGTAATGGT 52434
Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||| ||||| | |||||| || ||||| |||||
Sbjct 52435 CTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 52467
Score = 93.3 bits (102), Expect = 3e-14
Identities = 80/99 (81%), Gaps = 0/99 (0%)
Strand=Plus/Plus
Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845
||||||||||||||| ||||| || ||| |||| |||| || || |||||||| |||||
Sbjct 52788 CTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAA 52847
Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
||| || || |||||||| | || | |||||||||||
Sbjct 52848 GATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTGTC 52886
>seq145
Length=91869
Score = 118 bits (130), Expect = 7e-22
Identities = 144/194 (74%), Gaps = 8/194 (4%)
Strand=Plus/Plus
Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847
||||||||||||| ||||| || ||| |||| |||| ||||| ||||| || |||||||
Sbjct 6020 CCTTCTGAATGTTGTAGTCAGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGA 6079
Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907
|||| || |||||||| | || | ||||||||||| | || || ||||| ||
Sbjct 6080 TCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGAC--AT- 6136
Query 34908 CTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963
| ||||| || || ||| || || | ||| || ||||| ||||| ||||||||
Sbjct 6137 -TGTCGATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTG 6195
Query 34964 ACAAAGATCTGCAT 34977
|| || ||||||||
Sbjct 6196 ACGAAAATCTGCAT 6209
>seq64
Length=146407
Score = 116 bits (128), Expect = 2e-21
Identities = 148/204 (73%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
|||||| ||||| | |||| ||||||||| ||||| ||||| || || |||| ||||
Sbjct 70950 CAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATC 70891
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
|| || ||||| || || ||||||| || |||||||| | || | |||||||||||
Sbjct 70890 CTCAAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTC 70831
Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944
| || || |||||| | |||| || | |||||| || | ||| |||||
Sbjct 70830 CTGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAAGACTCGACCTCCAGGGTAATGGT 70771
Query 34945 CTTTCCCGTGAGGGTCTTTACAAA 34968
||| ||||| |||||||| || ||
Sbjct 70770 CTTACCCGTCAGGGTCTTGACGAA 70747
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325687985140847
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |