Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20platani_20[genbank_20GCA_5F000978885.1_202015-04-23] 1,213 sequences; 29,181,415 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq338 132 3e-26 seq145 118 7e-22 seq64 116 2e-21 >seq338 Length=64627 Score = 132 bits (146), Expect = 3e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||| ||||| || ||||||||| ||||| ||||| || ||| |||| |||| Sbjct 52027 CAGAACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATC 52086 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||||||||||||||| || || ||||| || | || | ||||||||||| Sbjct 52087 CTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCCGGAGGGATACCCTCCTTGTC 52146 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || |||||| | || | ||| || |||||| || | ||| ||||| Sbjct 52147 CTGGATCTTGGATTTGACATTGTCAATGGTATCAGAGGACTCGACTTCGAGGGTAATGGT 52206 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| ||||| | |||||| || ||||| ||||| Sbjct 52207 CTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 52239 Score = 127 bits (140), Expect = 1e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 |||||||| ||||| || || ||||||||||| ||||| || ||| |||| |||| Sbjct 52483 CAGGACCAAGTGAAGAGTAGATTCTTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATC 52542 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||||||||||||||| || || |||||||| | || | ||||||||||| Sbjct 52543 CTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTGTC 52602 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || |||||| | || | || || |||||| || | ||| ||||| Sbjct 52603 CTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAGGACTCGACTTCGAGGGTAATGGT 52662 Query 34945 CTTTCCCGTGAGGGTCTTTACAA 34967 |||||| || |||||||| |||| Sbjct 52663 CTTTCCGGTAAGGGTCTTGACAA 52685 Score = 105 bits (116), Expect = 4e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||| ||||| || || ||||||||||| |||||||| ||| | || |||| Sbjct 52255 CAGAACCAAGTGAAGAGTAGATTCTTTCTGAATGTTGTAGTCCGAAAGGGTACGGCCATC 52314 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || |||||||| || || || || || ||||| || | || | |||||||| || Sbjct 52315 CTCGAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGATCCGGGGGGATACCCTCCTTATC 52374 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || ||||| | || | ||| || |||||| || | ||| ||||| Sbjct 52375 CTGGATCTTGGACTTGACATTGTCAATGGTATCAGAGGACTCGACTTCGAGGGTAATGGT 52434 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| ||||| | |||||| || ||||| ||||| Sbjct 52435 CTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 52467 Score = 93.3 bits (102), Expect = 3e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||||||||| ||||| || ||| |||| |||| || || |||||||| ||||| Sbjct 52788 CTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAA 52847 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||| || || |||||||| | || | ||||||||||| Sbjct 52848 GATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTGTC 52886 >seq145 Length=91869 Score = 118 bits (130), Expect = 7e-22 Identities = 144/194 (74%), Gaps = 8/194 (4%) Strand=Plus/Plus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 ||||||||||||| ||||| || ||| |||| |||| ||||| ||||| || ||||||| Sbjct 6020 CCTTCTGAATGTTGTAGTCAGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGA 6079 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 |||| || |||||||| | || | ||||||||||| | || || ||||| || Sbjct 6080 TCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGAC--AT- 6136 Query 34908 CTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | ||||| || || ||| || || | ||| || ||||| ||||| |||||||| Sbjct 6137 -TGTCGATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTG 6195 Query 34964 ACAAAGATCTGCAT 34977 || || |||||||| Sbjct 6196 ACGAAAATCTGCAT 6209 >seq64 Length=146407 Score = 116 bits (128), Expect = 2e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 |||||| ||||| | |||| ||||||||| ||||| ||||| || || |||| |||| Sbjct 70950 CAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATC 70891 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| || || ||||||| || |||||||| | || | ||||||||||| Sbjct 70890 CTCAAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTC 70831 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || |||||| | |||| || | |||||| || | ||| ||||| Sbjct 70830 CTGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAAGACTCGACCTCCAGGGTAATGGT 70771 Query 34945 CTTTCCCGTGAGGGTCTTTACAAA 34968 ||| ||||| |||||||| || || Sbjct 70770 CTTACCCGTCAGGGTCTTGACGAA 70747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325687985140847