Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20platani_20[genbank_20GCA_5F000978885.1_202015-04-23]
1,213 sequences; 29,181,415 total letters
Query= NC_023177.1
Length=124688
Score E
Sequences producing significant alignments: (Bits) Value
seq338 98.7 8e-16
>seq338
Length=64627
Score = 98.7 bits (108), Expect = 8e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
|||||||| || ||||| || || || ||||| ||||||||| ||||| ||| |
Sbjct 52467 ATGCAAATCTTCGTCAAGACCTTGACGGGCAAGACCATTACCCTCGAAGTCGAGTCCTCT 52408
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
||||| | | | | || || ||||| ||||| || || | ||| |||||||
Sbjct 52407 GATACCATTGACAATGTCAAGTCCAAGATCCAGGATAAGGAGGGTATCCCCCCGGATCAG 52348
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
||| | || |||| ||| || || ||||| ||||| | | || | |||||||||||
Sbjct 52347 CAGCGTCTCATTTTTGCTGGAAAGCAGCTCGAGGATGGCCGTACCCTTTCGGACTACAAC 52288
Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782
||||| || || ||||| | ||| |||| || | |||| || ||
Sbjct 52287 ATTCAGAAAGAATCTACTCTTCACTTGGTTCTGCGTCTGCGTGGTGG 52241
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
|||||||| || ||||| || || || ||||| ||||||||| ||||| ||| |
Sbjct 52239 ATGCAAATCTTCGTCAAGACCTTGACGGGCAAGACCATTACCCTCGAAGTCGAGTCCTCT 52180
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
||||| | | | | || ||| ||||| || || || || | || |||||||
Sbjct 52179 GATACCATTGACAATGTCAAATCCAAGATCCAGGACAAGGAGGGTATCCCTCCGGATCAG 52120
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
||| | || || | || || || ||||| ||||| | | || | | |||||||||
Sbjct 52119 CAGCGTCTCATCTTCGCCGGAAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTACAAC 52060
Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782
|| || ||||||||||| | ||| |||| || | |||| || ||
Sbjct 52059 ATCCAGAAGGAGTCTACTCTTCACTTGGTTCTGCGTCTGCGTGGTGG 52013
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 398870903229757
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |