Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20platani_20[genbank_20GCA_5F000978885.1_202015-04-23]
1,213 sequences; 29,181,415 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq338 152 1e-31
seq64 86.0 1e-11
>seq338
Length=64627
Score = 152 bits (168), Expect = 1e-31
Identities = 171/229 (75%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| || | || ||||||||| ||||| ||||||||||||||||| || || || || |
Sbjct 52239 TACCACCACGCAGACGCAGAACCAAGTGAAGAGTAGATTCTTTCTGAATGTTGTAGTCCG 52298
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| || | | || || || || || ||||||||||| || || | || ||||| || |
Sbjct 52299 AAAGGGTACGGCCATCCTCGAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGATCCGGGG 52358
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| || || |||||||| || ||||| | || ||||| ||||| |||||| | || |
Sbjct 52359 GGATACCCTCCTTATCCTGGATCTTGGACTTGACATTGTCAATGGTATCAGAGGACTCGA 52418
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|||| | || || |||||||| ||||| ||||| || || || |||||
Sbjct 52419 CTTCGAGGGTAATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 52467
Score = 107 bits (118), Expect = 4e-18
Identities = 155/219 (71%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| || | || |||||| || ||||| ||||||||||||||||| || || || || |
Sbjct 52467 TACCACCACGCAGACGCAGGACCAAGTGAAGAGTAGATTCTTTCTGAATGTTGTAGTCGG 52526
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| || | | || || || || || ||||| || ||||| || | || || || ||||
Sbjct 52527 AGAGGGTGCGGCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAG 52586
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| || || ||||| || || ||||| | || || || ||||| || || | || |
Sbjct 52587 GGATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAGGACTCGA 52646
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAA 82800
|||| | || || ||||| || || | ||||| ||||
Sbjct 52647 CTTCGAGGGTAATGGTCTTTCCGGTAAGGGTCTTGACAA 52685
>seq64
Length=146407
Score = 86.0 bits (94), Expect = 1e-11
Identities = 151/220 (69%), Gaps = 0/220 (0%)
Strand=Plus/Minus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| || | || ||||| || | ||| || || || || ||||| || || || || |
Sbjct 70966 TACCACCACGCAGGCGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 70907
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| ||| | | || || || || || || ||||||||||| | | || || || || |
Sbjct 70906 ACAGAGTGCGGCCATCCTCAAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCCGGGG 70847
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| || || ||||| || || ||||| | || || || || ||||| || || || |
Sbjct 70846 GAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAAGACTCGA 70787
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAA 82801
| |||| || || ||||| || |||| ||||| || ||
Sbjct 70786 CCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAA 70747
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981811940871207
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |