Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20platani_20[genbank_20GCA_5F000978885.1_202015-04-23] 1,213 sequences; 29,181,415 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq101 230 3e-54 seq411 122 1e-21 >seq101 Length=72697 Score = 230 bits (254), Expect = 3e-54 Identities = 366/513 (71%), Gaps = 24/513 (5%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| | |||||| || ||||||||||||||||| ||||| || |||||| | || | Sbjct 41556 GATCTGGCAGATGTAC-AAGAAGGCCGAGGCCTCCTTCTGGACTGCTGAGGAGATTGATC 41498 Query 1455835 TCGGCGCCGA----CACGGTCCACTGGGTGT--CG-CTGAGCGACGACGAGCGCCATTTC 1455887 || || |||| ||||| || |||| | | ||||||| | ||| Sbjct 41497 TCTCTAAGGATCTCCACG----ACTGGAACAACCGTCTGAACAAAGACGAGCAGTACTTC 41442 Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947 ||| ||| | || ||||| ||| || ||| ||||||||||| ||| || || | Sbjct 41441 ATCTCCCACATTCTTGCCTTCTTT-GCTGCCTCTGATGGCATCGTCAACGAAAATCTCGT 41383 Query 1455948 CGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGAT 1456007 | ||||| ||||| || | || ||||| || | || ||||| |||||||| Sbjct 41382 TGAGCGCTTCTCAGGCGAGGTGCAGATCCCCGAGGCCCGCTGCTTCTACGGTTTCCAGAT 41323 Query 1456008 CGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067 | || ||||||||||||||||||||||||||||| ||||| ||||||||| ||||||| Sbjct 41322 CATGATGGAAAACATCCACTCTGAAACCTACTCGCTGCTGATTGACACCTACATCAAGGA 41263 Query 1456068 CCCGGTCGAGAAGGAC-CACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAA 1456126 || ||| | | || |||| || ||||| ||||| | || | | | | Sbjct 41262 GCC-CTCGCAACGCACATACCTGTTCAATGCCATTGACACTATTCCCTGCATCCGCCGCA 41204 Query 1456127 AGGCCGACTGGGCGATGAAGTGGATCA---ACAAGGAGGGCCTCGACACTTTGCCGAGCG 1456183 ||||||||||||| |||||||||||| |||||||| ||||| |||||| |||| Sbjct 41203 AGGCCGACTGGGCTCTGAAGTGGATCACCGACAAGGAG----TCGAC-GTTTGCCCAGCG 41149 Query 1456184 GCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTT 1456242 || || | |||||| || |||||||||||||||||||| ||| ||| | ||||||| Sbjct 41148 CCTAGTTGCCTTTGCTGCTGTCGAGGGCATCTTTTTCTCAGGCGCCTTCGCCTCCATCTT 41089 Query 1456243 TTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 ||||| ||||| || |||||||| ||||| Sbjct 41088 CTGGCTGCGCAAGCGTGGTCTCATGCCTGGTCT 41056 >seq411 Length=11963 Score = 122 bits (134), Expect = 1e-21 Identities = 334/504 (66%), Gaps = 21/504 (4%) Strand=Plus/Plus Query 259682 CACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACTTT 259741 |||||||| | || ||| ||||||| ||| ||| ||||| |||| ||||||| Sbjct 6514 CACAAGGATGAGCTGGACTCTGCCATTGTGTACGACCGTGACTTCAACTACCAGTACTTT 6573 Query 259742 GGTCTGGCGAC-CTTGCGCCGGTCCTACCTGACCAAAGTGCGCGATATTGTCGTCGAGCG 259800 || | ||| || | || | || ||||| |||| | | || | || ||||| Sbjct 6574 GGCTTTAAGACGCTCGAGC-GTTCGTACCTACTCAAACTTGATGGTAAGATTGTTGAGCG 6632 Query 259801 GCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGACAA 259860 |||||| | ||| | |||||||| || | || ||| |||| ||||| Sbjct 6633 TCCCCAGCACATGATAATGCGTGTTGCTGTGGGT-ATTTGGGGT-----------GACAA 6680 Query 259861 TGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCA-GTTGTTCACCTCA- 259918 | | || | ||||| | |||||| | ||||| |||| ||| ||||| ||| Sbjct 6681 AG---TCGATCGTGTGCTTGAAACCTACAACCTTATGTCT-AGCAAGTTCTTCAC-TCAC 6735 Query 259919 GCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTG 259978 || | || ||||||||||||||||| || || | | ||| || || || || || Sbjct 6736 GCATCACCTACGCTCTTTAATGCCGGTACTCCCCAGGCTCAGTTGTCTTCATGTTTCCTA 6795 Query 259979 TTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTC 260038 | |||||||||| || ||||||||||| || || || |||||| || || | Sbjct 6796 GTCGACATGAAGGATGACAGCATCGAGGGCATTTACGATACCCTCAAGACTTGTGCCATG 6855 Query 260039 ATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCC 260098 || |||||| ||| || || |||||| | | ||| | || ||| | ||| | Sbjct 6856 ATTTCCAAGATGGCTGGTGGTATCGGTCTCAATGTTCACCGTATTCGTGCCACTGGCTCT 6915 Query 260099 TACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAAC 260158 ||| | || ||||| ||||| || |||||| | || |||||||| || ||||| ||| Sbjct 6916 TACATTGCTGGCACTAACGGTACTTCGAACGGCATCGTTCCCATGCTACGTGTTTTCAAC 6975 Query 260159 GACACGGCGCGCTACGTCGACCAG 260182 |||| || || || || |||||| Sbjct 6976 AACACCGCCCGTTATGTTGACCAG 6999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177694203920506