Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20platani_20[genbank_20GCA_5F000978885.1_202015-04-23]
1,213 sequences; 29,181,415 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq411 201 2e-46
seq101 131 2e-25
>seq411
Length=11963
Score = 201 bits (222), Expect = 2e-46
Identities = 638/981 (65%), Gaps = 20/981 (2%)
Strand=Plus/Minus
Query 69268 AGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCA---TATTGTATT 69324
|| || | ||||||||| || || || || ||||||| || ||| || | ||
Sbjct 7487 AGGGCGAGAGATGCTAGGTTGCACACAGCGACCTCATCAGGG---GCACAGTACTCGATA 7431
Query 69325 ATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTG 69384
||||| || || || || || || || || ||||||| |||||| ||||| |
Sbjct 7430 ATCTCAGTGCACAGGTTCGAACTGCGAATGGTACCTAGATTTTTCTGATTGCTCTTGCGG 7371
Query 69385 TTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATA 69444
|| ||| ||| ||||| || ||||| || | ||||| ||| |||||| || | |||
Sbjct 7370 TTGCAGTGGTCTTTGTAGAGCATAAAAGGGTTGCCAGTCTCAGTCTGAGCCTCCAGAATG 7311
Query 69445 GATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAAC---GCTTCTCTTTTTCATAT 69501
| | ||| | | || || | || | || || | ||| || || ||
Sbjct 7310 GCATACCACAGTTTCTGGGCCTTGACAAC---CATGCGACCGCGGCCCTCCTTCTCGTAC 7254
Query 69502 TGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTT 69561
| | ||| || || || || || || | ||| |||| || || ||||||||
Sbjct 7253 TTTTCATACAGAGCCTCAAACTCTTCGCCATAGCAATCCGCCAAGCCGGGGCATTCATTG 7194
Query 69562 GGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATC 69621
|| ||||| | | ||| | |||| | || ||| || ||||| || | ||| |||
Sbjct 7193 GGGCACATGAGAGTCCAGTCCTCATTCTTCTCAACACGCTTCATGAACAAGTCGCAGATC 7134
Query 69622 CAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCC-TGTAttttttttAAG 69680
|| || || | || || || | | | |||||| ||||| || | || ||||
Sbjct 7133 CACAGGGCCAAGAATAGGTCACGAGCACGGACTTCTTCCTTTCCGTGGTTCTTGCGTAAG 7074
Query 69681 ATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGG 69740
||||| ||||| | | ||||| ||||||||| || ||||| || || | | |||| ||
Sbjct 7073 -TCGAGGAACTCGAAGACATCAGCATGCCATGGCTCGAGATAAATGGCAAAGGCTCCAGG 7015
Query 69741 TCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGG 69800
||| || ||||| ||||| || | || | ||| ||||| || | || | ||||| ||
Sbjct 7014 TCGCTTGTTTCCACCCTGGTCAACATAACGGGCGGTGTTGTTGAAAACACGTAGCATGGG 6955
Query 69801 AATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATT 69860
|| || || || || |||| || || |||| ||| ||| || | || ||||||
Sbjct 6954 AACGATGCCGTTCGAAGTACCGTTAGTGCCAGCAATGTAAGAGCCAGTGGCACGAATACG 6895
Query 69861 ACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGT 69920
|| | ||||| || || || ||||| || || || | |||||| || | ||
Sbjct 6894 GTGAACATTGAGACCGATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGT 6835
Query 69921 GTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTG 69980
|| || || ||||| ||||| ||||| |||||| | || ||||| ||||| ||
Sbjct 6834 ATCGTAAATGCCCTCGATGCTGTCATCCTTCATGTCGACTAGGAAACATGAAGACAACTG 6775
Query 69981 ATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGA 70040
| || ||| || |||||||| | ||||| |||||||||||||| | || |||
Sbjct 6774 AGCCTGGGGAGTACCGGCATTAAAGAGCGTAGGTGATGCGTGAGTGAAGAACTTGCTAGA 6715
Query 70041 AAGCAGATTGTATGTTTCAA-TAGCTGAT--TCTATATCCCACTGATGAATTCCTATCGC 70097
| || ||||| ||||||| | ||| || | || | | ||| || | ||
Sbjct 6714 CATAAGGTTGTAGGTTTCAAGCACACGATCGACTTTGTCACCC---CAAATACCCACAGC 6658
Query 70098 GACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTA 70157
|||||||| | ||| ||||| || || || || | ||| || | ||| | |||||
Sbjct 6657 AACACGCATTATCATGTGCTGGGGACGCTCAACAATCTTACCATCAAGTTTGAGTAGGTA 6598
Query 70158 TGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217
|| || || || ||||| ||||| || | ||| ||||| | ||||| | |||
Sbjct 6597 CGAACGCTCGAGCGTCTTAAAGCCAAAGTACTGGTAGTTGAAGTCACGGTCGTACACAAT 6538
Query 70218 AACAGAATTTAGTTTATCCTT 70238
|||| | || | ||||||
Sbjct 6537 GGCAGAGTCCAGCTCATCCTT 6517
>seq101
Length=72697
Score = 131 bits (144), Expect = 2e-25
Identities = 543/850 (64%), Gaps = 10/850 (1%)
Strand=Plus/Plus
Query 39326 TTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 39385
|| ||||| || || || || ||||| || || ||||| ||||| | | || || ||
Sbjct 40708 TTCTGGTAGTCGCCGACACGCTTCTCAAAGAAGTTAGTCTTGCCGCCGAGCGAGATGTTC 40767
Query 39386 TCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATC 39445
|||||||| || || || || || ||| || || | |||| | ||
Sbjct 40768 TCCATGAAGTCGAATGGGTTTGTGGCACGGTACACCTTCTCGTTGCCTAGAGCAACAAGT 40827
Query 39446 AATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGT 39505
| | || |||||||| || ||||| ||||||| || |||||||||| ||
Sbjct 40828 AGGCGGTCAGCAACAAACTCAATGTACTGCTTCATCAGATCGGCGTTCATTCCTAGCAGA 40887
Query 39506 TTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATC 39565
|| |||||||| || || ||||| || ||||| | ||||| || || || |||
Sbjct 40888 CCGCAGGGCAGAGCCTCGGTCAGGAACTCCTTCTCGATCACGACGGCATCAGTGATGATC 40947
Query 39566 GATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGAAG 39625
| || | || | || || | | | ||| |||| | ||| || |||
Sbjct 40948 TTTTGCACAAGGTCCTTGCTGGGGCGGTTGTTCAGATGCGAGAACAGCAGGCAAGCAAAG 41007
Query 39626 TCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATT 39685
|| || ||||||||||| | | ||| | ||||| || || || || ||||||||
Sbjct 41008 TCGGTGTGCAGGCCCTCATCACGAGAAATAAGCTCGTTTGAGAAGGTCAGACCAGGCATG 41067
Query 39686 AGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCT 39745
||||||||||| ||||| || |||| || || | || || || |||||||| ||
Sbjct 41068 AGACCACGCTTGCGCAGCCAGAAGATGGAGGCGAAGGCGCCTGAGAAAAAGATGCCCTCG 41127
Query 39746 ACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTAT--GT-ATCCACTTC 39802
|| || ||||| ||||| || | || | | | | || || | || |||||||||
Sbjct 41128 ACAGCAGCAAAGGCAACTAGGCGCTGGGCAAACGTCGACTCCTTGTCGGTGATCCACTTC 41187
Query 39803 TGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATA- 39861
| ||||| || || || | || || || || || || ||||| || || ||
Sbjct 41188 AGAGCCCAGTCGGCCTTGCGGCGGATGCAGGGAATAGTGTCAATGGCATTGAACAGGTAT 41247
Query 39862 ATGTTTTTC-ATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAAT 39920
|| || | | | || || | || || || || | ||| || |||| || |
Sbjct 41248 GTGCGTTGCGAGGGC--TCCTTGATGTAGGTGTCAATCAGCAGCGAGTAGGTTTCAGAGT 41305
Query 39921 GGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCT 39980
|||||||||| ||| ||||| || ||||| || || | || || | || || ||||
Sbjct 41306 GGATGTTTTCCATCATGATCTGGAAACCGTAGAAGCAGCGGGCCTCGGGGATCTGCACCT 41365
Query 39981 CTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATG 40040
| | || | || | | |||||| || || || |||||| || ||||| || |
Sbjct 41366 CGCCTGAGAAGCGCTCAACGAGATTTTCGTTGACGATGCCATCAGAGGCAGCAAAGAAGG 41425
Query 40041 CCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCA---ATTTATTCCAGTCATTGA 40097
| | | || || || || | || || ||| || |||||||| | ||
Sbjct 41426 CAAGAATGTGGGAGATGAAGTACTGCTCGTCTTTGTTCAGACGGTTGTTCCAGTCGTGGA 41485
Query 40098 TATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACA 40157
||| || || | ||| | || ||||| ||||| || || ||||| ||||| |||||||
Sbjct 41486 GATCCTTAGAGAGATCAATCTCCTCAGCAGTCCAGAAGGAGGCCTCGGCCTTCTTGTACA 41545
Query 40158 TGTTCCATAT 40167
| | ||| ||
Sbjct 41546 TCTGCCAGAT 41555
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686898384745320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |