Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20platani_20[genbank_20GCA_5F000978885.1_202015-04-23] 1,213 sequences; 29,181,415 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq411 201 2e-46 seq101 131 2e-25 >seq411 Length=11963 Score = 201 bits (222), Expect = 2e-46 Identities = 638/981 (65%), Gaps = 20/981 (2%) Strand=Plus/Minus Query 69268 AGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCA---TATTGTATT 69324 || || | ||||||||| || || || || ||||||| || ||| || | || Sbjct 7487 AGGGCGAGAGATGCTAGGTTGCACACAGCGACCTCATCAGGG---GCACAGTACTCGATA 7431 Query 69325 ATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTG 69384 ||||| || || || || || || || || ||||||| |||||| ||||| | Sbjct 7430 ATCTCAGTGCACAGGTTCGAACTGCGAATGGTACCTAGATTTTTCTGATTGCTCTTGCGG 7371 Query 69385 TTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATA 69444 || ||| ||| ||||| || ||||| || | ||||| ||| |||||| || | ||| Sbjct 7370 TTGCAGTGGTCTTTGTAGAGCATAAAAGGGTTGCCAGTCTCAGTCTGAGCCTCCAGAATG 7311 Query 69445 GATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAAC---GCTTCTCTTTTTCATAT 69501 | | ||| | | || || | || | || || | ||| || || || Sbjct 7310 GCATACCACAGTTTCTGGGCCTTGACAAC---CATGCGACCGCGGCCCTCCTTCTCGTAC 7254 Query 69502 TGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTT 69561 | | ||| || || || || || || | ||| |||| || || |||||||| Sbjct 7253 TTTTCATACAGAGCCTCAAACTCTTCGCCATAGCAATCCGCCAAGCCGGGGCATTCATTG 7194 Query 69562 GGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATC 69621 || ||||| | | ||| | |||| | || ||| || ||||| || | ||| ||| Sbjct 7193 GGGCACATGAGAGTCCAGTCCTCATTCTTCTCAACACGCTTCATGAACAAGTCGCAGATC 7134 Query 69622 CAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCC-TGTAttttttttAAG 69680 || || || | || || || | | | |||||| ||||| || | || |||| Sbjct 7133 CACAGGGCCAAGAATAGGTCACGAGCACGGACTTCTTCCTTTCCGTGGTTCTTGCGTAAG 7074 Query 69681 ATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGG 69740 ||||| ||||| | | ||||| ||||||||| || ||||| || || | | |||| || Sbjct 7073 -TCGAGGAACTCGAAGACATCAGCATGCCATGGCTCGAGATAAATGGCAAAGGCTCCAGG 7015 Query 69741 TCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGG 69800 ||| || ||||| ||||| || | || | ||| ||||| || | || | ||||| || Sbjct 7014 TCGCTTGTTTCCACCCTGGTCAACATAACGGGCGGTGTTGTTGAAAACACGTAGCATGGG 6955 Query 69801 AATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATT 69860 || || || || || |||| || || |||| ||| ||| || | || |||||| Sbjct 6954 AACGATGCCGTTCGAAGTACCGTTAGTGCCAGCAATGTAAGAGCCAGTGGCACGAATACG 6895 Query 69861 ACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGT 69920 || | ||||| || || || ||||| || || || | |||||| || | || Sbjct 6894 GTGAACATTGAGACCGATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGT 6835 Query 69921 GTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTG 69980 || || || ||||| ||||| ||||| |||||| | || ||||| ||||| || Sbjct 6834 ATCGTAAATGCCCTCGATGCTGTCATCCTTCATGTCGACTAGGAAACATGAAGACAACTG 6775 Query 69981 ATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGA 70040 | || ||| || |||||||| | ||||| |||||||||||||| | || ||| Sbjct 6774 AGCCTGGGGAGTACCGGCATTAAAGAGCGTAGGTGATGCGTGAGTGAAGAACTTGCTAGA 6715 Query 70041 AAGCAGATTGTATGTTTCAA-TAGCTGAT--TCTATATCCCACTGATGAATTCCTATCGC 70097 | || ||||| ||||||| | ||| || | || | | ||| || | || Sbjct 6714 CATAAGGTTGTAGGTTTCAAGCACACGATCGACTTTGTCACCC---CAAATACCCACAGC 6658 Query 70098 GACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTA 70157 |||||||| | ||| ||||| || || || || | ||| || | ||| | ||||| Sbjct 6657 AACACGCATTATCATGTGCTGGGGACGCTCAACAATCTTACCATCAAGTTTGAGTAGGTA 6598 Query 70158 TGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 || || || || ||||| ||||| || | ||| ||||| | ||||| | ||| Sbjct 6597 CGAACGCTCGAGCGTCTTAAAGCCAAAGTACTGGTAGTTGAAGTCACGGTCGTACACAAT 6538 Query 70218 AACAGAATTTAGTTTATCCTT 70238 |||| | || | |||||| Sbjct 6537 GGCAGAGTCCAGCTCATCCTT 6517 >seq101 Length=72697 Score = 131 bits (144), Expect = 2e-25 Identities = 543/850 (64%), Gaps = 10/850 (1%) Strand=Plus/Plus Query 39326 TTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 39385 || ||||| || || || || ||||| || || ||||| ||||| | | || || || Sbjct 40708 TTCTGGTAGTCGCCGACACGCTTCTCAAAGAAGTTAGTCTTGCCGCCGAGCGAGATGTTC 40767 Query 39386 TCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATC 39445 |||||||| || || || || || ||| || || | |||| | || Sbjct 40768 TCCATGAAGTCGAATGGGTTTGTGGCACGGTACACCTTCTCGTTGCCTAGAGCAACAAGT 40827 Query 39446 AATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGT 39505 | | || |||||||| || ||||| ||||||| || |||||||||| || Sbjct 40828 AGGCGGTCAGCAACAAACTCAATGTACTGCTTCATCAGATCGGCGTTCATTCCTAGCAGA 40887 Query 39506 TTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATC 39565 || |||||||| || || ||||| || ||||| | ||||| || || || ||| Sbjct 40888 CCGCAGGGCAGAGCCTCGGTCAGGAACTCCTTCTCGATCACGACGGCATCAGTGATGATC 40947 Query 39566 GATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGAAG 39625 | || | || | || || | | | ||| |||| | ||| || ||| Sbjct 40948 TTTTGCACAAGGTCCTTGCTGGGGCGGTTGTTCAGATGCGAGAACAGCAGGCAAGCAAAG 41007 Query 39626 TCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATT 39685 || || ||||||||||| | | ||| | ||||| || || || || |||||||| Sbjct 41008 TCGGTGTGCAGGCCCTCATCACGAGAAATAAGCTCGTTTGAGAAGGTCAGACCAGGCATG 41067 Query 39686 AGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCT 39745 ||||||||||| ||||| || |||| || || | || || || |||||||| || Sbjct 41068 AGACCACGCTTGCGCAGCCAGAAGATGGAGGCGAAGGCGCCTGAGAAAAAGATGCCCTCG 41127 Query 39746 ACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTAT--GT-ATCCACTTC 39802 || || ||||| ||||| || | || | | | | || || | || ||||||||| Sbjct 41128 ACAGCAGCAAAGGCAACTAGGCGCTGGGCAAACGTCGACTCCTTGTCGGTGATCCACTTC 41187 Query 39803 TGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATA- 39861 | ||||| || || || | || || || || || || ||||| || || || Sbjct 41188 AGAGCCCAGTCGGCCTTGCGGCGGATGCAGGGAATAGTGTCAATGGCATTGAACAGGTAT 41247 Query 39862 ATGTTTTTC-ATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAAT 39920 || || | | | || || | || || || || | ||| || |||| || | Sbjct 41248 GTGCGTTGCGAGGGC--TCCTTGATGTAGGTGTCAATCAGCAGCGAGTAGGTTTCAGAGT 41305 Query 39921 GGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCT 39980 |||||||||| ||| ||||| || ||||| || || | || || | || || |||| Sbjct 41306 GGATGTTTTCCATCATGATCTGGAAACCGTAGAAGCAGCGGGCCTCGGGGATCTGCACCT 41365 Query 39981 CTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATG 40040 | | || | || | | |||||| || || || |||||| || ||||| || | Sbjct 41366 CGCCTGAGAAGCGCTCAACGAGATTTTCGTTGACGATGCCATCAGAGGCAGCAAAGAAGG 41425 Query 40041 CCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCA---ATTTATTCCAGTCATTGA 40097 | | | || || || || | || || ||| || |||||||| | || Sbjct 41426 CAAGAATGTGGGAGATGAAGTACTGCTCGTCTTTGTTCAGACGGTTGTTCCAGTCGTGGA 41485 Query 40098 TATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACA 40157 ||| || || | ||| | || ||||| ||||| || || ||||| ||||| ||||||| Sbjct 41486 GATCCTTAGAGAGATCAATCTCCTCAGCAGTCCAGAAGGAGGCCTCGGCCTTCTTGTACA 41545 Query 40158 TGTTCCATAT 40167 | | ||| || Sbjct 41546 TCTGCCAGAT 41555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686898384745320