Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20platani_20[genbank_20GCA_5F000978885.1_202015-04-23]
1,213 sequences; 29,181,415 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq411 163 4e-35
seq101 105 8e-18
seq76 87.8 2e-12
>seq411
Length=11963
Score = 163 bits (180), Expect = 4e-35
Identities = 1037/1643 (63%), Gaps = 39/1643 (2%)
Strand=Plus/Minus
Query 110369 TAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATA-TGCATAGAAGAGAGCTT 110427
|||||||| || |||||||| ||| ||||||| || || | ||||| | || |||
Sbjct 8351 TAGTACATGCCCGTCTTGAGACCTAGTTTCCA-GCCAGCAAAGTGCATGCTGGTGATCTT 8293
Query 110428 GGACATCGTTGGACTTTCCATGAAGAGGTTCATACTTTGACTTTGGTCAATGAAGCGCCC 110487
| ||| || ||| || |||| | ||| | | || |||||||||||| ||
Sbjct 8292 GCCCATGGTGGGATCTTTCATGTGAATGTTTAGAGACTGCGATTGGTCAATGAAAGCACC 8233
Query 110488 CCGTTGTGCCGCCATATCAATGACATCCTTCATCTT---AATTTCCCAAACTGTGCGATA 110544
|| | || ||||| | | || | | || ||| |||||||| || ||
Sbjct 8232 ACGATCAGCAGCCATTTGCA---CAACTGTACGCTGGGAAATCTCCCAAACGGTCTTGTA 8176
Query 110545 GAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCTTCAC 110604
||| || |||||| | || || ||||| ||||||||||| || || |
Sbjct 8175 CAGAGCTTTAATATCAGCAGGAATGCTAGAGATGTTCTGGATGGAGCCATTGTCCGCAAT 8116
Query 110605 CATGAGATCCTTCATATCCTTGGACCAGAGACCAA--TCTTCTTGAGGTCA--TTGACG- 110659
||| ||| |||||| | | ||||| | ||||| || || |||||| | || |
Sbjct 8115 AATGCGATTCTTCATGTTGTCAGACCATAAACCAAGATCGACT--AGGTCACGTAGAAGC 8058
Query 110660 -AGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGT 110718
||| | ||||| | ||||| || || || | | | |||| ||||| |
Sbjct 8057 CAGGGG----TTGACGACCTGGAACTCGCCAGCAAGAACGCGGCGCTGGTAAATGTTGGA 8002
Query 110719 TGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCAT 110778
|||||| ||||| ||||| ||||| || ||||| || || | ||| |||||| |||||
Sbjct 8001 TGTGTACGGTTCGAAGCACTCATTGTTGCCCAAAATCTGCGACGTGCTGGCTGTAGGCAT 7942
Query 110779 TGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATC 110838
||||| | | |||| || || | ||| | || ||| || ||||| ||| |
Sbjct 7941 GGGTGCAACTAGAAGAGAATTGCGTACACCATGCTGCTTAATCTTCTCCTTTAGAGAAGT 7882
Query 110839 CCAGTCGTA--GTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGG 110896
|||||| | | | | || || |||| | ||||||| |||||||| | | ||||||
Sbjct 7881 CCAGTCCCACAGGTCA-CTAGGAGTCACAT-CCCACATATCAAACTGCAAGATGCCTTGG 7824
Query 110897 GACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTC 110956
|| | |||||||||||| | ||| || | ||| | | | || | |||
Sbjct 7823 GAGACAGGAGAACCCTCATAAGTTGAGTAAGTACCCTCCGTCTGGGCGATTTCCATTGAA 7764
Query 110957 GCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCA 111016
|| || | ||||| || ||||||||||| || | || | || ||||||
Sbjct 7763 GCAGTTAGTGCGGCGTGGTAGATGGTTTCAAAAATCTGCTTGTTGAGCTGGCGTGCTTCA 7704
Query 111017 TCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAA 111076
|| ||||| | |||| || || | || || || || || ||||| | |
Sbjct 7703 GGGGATTCAAAAGGCATGCGGAGAGCAAGGAAAGCGTCAGCCAGGCCCTGTACACCGACA 7644
Query 111077 CCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTG 111136
||||| || | ||| ||||| || || | || || || || || |||
Sbjct 7643 CCAATGGGACGGTGGCGCATGTTGCTGTTGTGAGCTTCCTGGACAGGGTAGTGATTCACA 7584
Query 111137 TCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAA 111196
|| |||| |||||||| || ||||| | |||| ||| || || |||| | |
Sbjct 7583 TCGATGATGCGGTTTAGGTTGCGAACAACAACTTGGGTGACTTCGTGTAGCTTTTTAAAG 7524
Query 111197 TCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAA 111256
||| | | | | | | || | |||||||||| ||||| | |||||
Sbjct 7523 TCATACTCACCCTTGTTGTAGTCCACGAAGGAAGGAAGGGCGAGAGATGCTAGGTTGCAC 7464
Query 111257 ACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTA 111316
||||| |||||| | |||||| | ||| || || || | ||| ||||| |
Sbjct 7463 ACAGCGACCTCATCAGGGGCACAGTACTCGATAATCTCAGTGCACAGGTTCGAACTGCGA 7404
Query 111317 ATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAG 111376
|| || || | ||| || || || ||||| |||||| || ||||||||||| |
Sbjct 7403 ATGGTACCTAGATTTTTCTGATTGCTCTTGCGGTTGCAGTGGTCTTTGTAGAGCATAAAA 7344
Query 111377 GGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA-AACATCGGCGGCTGGTAC 111435
|| | || ||||| ||||| | | ||||| || | ||| | || | | || | ||
Sbjct 7343 GGGTTGCCAGTCTCAGTCTGAGCCTCCAGAATGGCATACCACAGTTTCTGGGCCTTG-AC 7285
Query 111436 AATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACC 111495
|| | | || |||||| |||||||||| || || || |||||||| || |
Sbjct 7284 AACCATGCGACCGCGGCCCTCCTTCTCGTACTTTTCATACAGAGCCTCAAACTCTTC-GC 7226
Query 111496 CACCGC-GTCGGAGAGACCTGGTGCCTT-GTCTGGACAGAAAAGAGACCATTGACCACCT 111553
|| || || | | | | || || || | || || | |||| ||| | || | |
Sbjct 7225 CATAGCAATCCGCCA-AGCCGGGGCATTCATTGGGGCACATGAGAGTCCA--GTCCTCAT 7169
Query 111554 TC--CTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTA- 111610
|| |||||| ||||||||||| | ||| |||||||||| | || || || | |
Sbjct 7168 TCTTCTCAACACGCTTCATGAACAAGTCGCAGATCCACAGGGCCAAGAATAGGTCACGAG 7109
Query 111611 CACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCG 111670
||| || | ||||| | || ||||| ||||| || |||||||| | || ||| ||
Sbjct 7108 CACGGA-CTTCTTCCTTTCCGTGGTTCTTGCGTAAGTCGAGGAACTCGAAGACATCAGCA 7050
Query 111671 TGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG---ACGCCCAGCTTGATTTACA 111727
||||||||||| ||||| | || | | ||| ||| ||| | || | |||
Sbjct 7049 TGCCATGGCTCGAGATAAATGGCAAAGGCTCCAGGTCGCTTGTTTCCACCCTGGTCAACA 6990
Query 111728 TAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTT 111787
|| || || ||| ||| || || || ||||| |||| || || | || ||| ||
Sbjct 6989 TAACGGGCGGTGTTGTTGAAAACACGTAGCATGGGAACGATGCCGTTCGAAGTACCGTTA 6930
Query 111788 GTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCA 111847
|| || ||| ||| | |||| | | | || | | | || ||||| |||
Sbjct 6929 GTGCCAGCAATGTAAGAGCCAGTGGCACGAATACGGTGAACATTGAGACCGATACCACCA 6870
Query 111848 GCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCC 111907
||| ||| || || ||||| | | || || | || || || | ||| |||
Sbjct 6869 GCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAAATGCCCTCGATGCTGTCA 6810
Query 111908 TCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAG 111967
||||| || ||| ||||| || |||| ||| | || ||||| ||||| |||
Sbjct 6809 TCCTTCATGTCGACTAGGAAACATGAAGACAACTGAGCCTGGGGAGTACCGGCATTAAAG 6750
Query 111968 AGGGTTGGTGTTGCGTGAATGAA 111990
|| || |||| ||||||| ||||
Sbjct 6749 AGCGTAGGTGATGCGTGAGTGAA 6727
>seq101
Length=72697
Score = 105 bits (116), Expect = 8e-18
Identities = 339/520 (65%), Gaps = 7/520 (1%)
Strand=Plus/Plus
Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718
||||| || ||| || |||||||| || |||||||| || ||||||||| |||||
Sbjct 41002 GCAAAGTCGGTGTGCAGGCCCTCATCACGAGAAATAAGCTCGTTTGAGAAGGTCAGACCA 41061
Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778
||||||||||| ||||| || ||| | || | | ||| | || ||||| |||||
Sbjct 41062 GGCATGAGACCACGCTTGCGCAGCCAGAAGATGGAGGCGAAGGCGCCTGAGAAAAAGATG 41121
Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTG-CATCAAA 122837
||||| ||| ||||| |||| ||||| | ||| || | ||| | ||| | |
Sbjct 41122 CCCTCGACAGCAGCAAAGGCAACTAGGCGCTGGGCAAACG-TCGACTCCTTGTCGGTGAT 41180
Query 122838 CCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAA 122897
||| |||| ||||| | ||||| || || || | ||| | ||||| | ||
Sbjct 41181 CCACTTCAGAGCCCAGTCGGCCTTGCGGCGGATGCAGGGAATAGTGTCAATGGCATTGAA 41240
Query 122898 TAACTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTC 122957
| | | || || ||||| ||||| ||||||||| || || |||||
Sbjct 41241 CAGGTATGTGCGTTGCGAGGGCTCCTTGATGTAGGTGTCAATCAGCAGCGAGTAGGTTTC 41300
Query 122958 GCCATGAACCATTT-CATTATGGCATTGATATGCGTAGAATGAGCGCGCTTCGCTTATCT 123016
|| | ||| ||| ||| | || | ||||||| |||| || ||| ||||
Sbjct 41301 AGAGTGGATGTTTTCCATCATGATCTGGA-AACCGTAGAAGCAGCGGGCCTCGGGGATCT 41359
Query 123017 GAACCTCATCCGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAA 123076
| ||||| | | || | | || ||| || || || ||||| || ||||||
Sbjct 41360 GCACCTCGCCTGAGAAGCGCTCAACGAGATTTTCGTTGACGATGCCATCAGAGGCAGCAA 41419
Query 123077 AGAATGCCAGGATGTACTTTATGAATTTCTTTTCATTTTCATTCA---GGGTCTTCCAGT 123133
|||| || || |||| ||||| | || || | || |||| || | |||||||
Sbjct 41420 AGAAGGCAAGAATGTGGGAGATGAAGTACTGCTCGTCTTTGTTCAGACGGTTGTTCCAGT 41479
Query 123134 CGTCAAGATCTTTGGACAAATCAACTTCTTCCGCAGTCCA 123173
||| ||||| || || | ||||| || || ||||||||
Sbjct 41480 CGTGGAGATCCTTAGAGAGATCAATCTCCTCAGCAGTCCA 41519
>seq76
Length=97792
Score = 87.8 bits (96), Expect = 2e-12
Identities = 210/313 (67%), Gaps = 10/313 (3%)
Strand=Plus/Minus
Query 11630 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 11689
||||||||||| ||||| || | || ||||| || | ||| || | |||| |||
Sbjct 15426 GCATCAATCTCGTCAATAAAAATGATGCATGGCGCGTTCTTGCGCGCCGTAGCAAAAAGA 15367
Query 11690 TCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGT--TTGCGGCAGAGC 11747
|| || || | | |||||| || ||||||||||| ||||| | || || || |
Sbjct 15366 TCACGCACACGCGACGGACCCACGCCGACAAACATCTCGACAAACTCGGAGCCGCTGA-C 15308
Query 11748 ACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCG 11807
|| || ||| || || ||| || || || |||| ||| || || ||||| ||||
Sbjct 15307 GCT-GAAGAACGGAACGCCTGACTCGCCAGCCGTGGCCTTGGCTAGCAGCGTCTTGCCCG 15249
Query 11808 TACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC---ACTTCCAAAAT 11864
| || || |||| || | ||||| || |||||||||||||| || |||| |
Sbjct 15248 TTCCCGGAGGGCCCGATAGGATAGCGCCGCGCGGGATCTTGGCACCCAGACGCACAAACT 15189
Query 11865 ATCTCTCGGGTTGCTTGAGAAAATCCACAATCTCTTCAAGTTCATCTTTGGCCGCGTCAA 11924
| ||||| | |||||| || | ||||| ||| | || | |||||| |||| |
Sbjct 15188 ---TTTCGGGCTTCTTGAGGAACTGCACAAACTCCATGATCTCGACCTTGGCCTCGTCCA 15132
Query 11925 TCCCCTCAACATC 11937
| || | |||||
Sbjct 15131 TTCCGGCCACATC 15119
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628022477464800
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