Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20platani_20[genbank_20GCA_5F000978885.1_202015-04-23] 1,213 sequences; 29,181,415 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq411 163 4e-35 seq101 105 8e-18 seq76 87.8 2e-12 >seq411 Length=11963 Score = 163 bits (180), Expect = 4e-35 Identities = 1037/1643 (63%), Gaps = 39/1643 (2%) Strand=Plus/Minus Query 110369 TAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATA-TGCATAGAAGAGAGCTT 110427 |||||||| || |||||||| ||| ||||||| || || | ||||| | || ||| Sbjct 8351 TAGTACATGCCCGTCTTGAGACCTAGTTTCCA-GCCAGCAAAGTGCATGCTGGTGATCTT 8293 Query 110428 GGACATCGTTGGACTTTCCATGAAGAGGTTCATACTTTGACTTTGGTCAATGAAGCGCCC 110487 | ||| || ||| || |||| | ||| | | || |||||||||||| || Sbjct 8292 GCCCATGGTGGGATCTTTCATGTGAATGTTTAGAGACTGCGATTGGTCAATGAAAGCACC 8233 Query 110488 CCGTTGTGCCGCCATATCAATGACATCCTTCATCTT---AATTTCCCAAACTGTGCGATA 110544 || | || ||||| | | || | | || ||| |||||||| || || Sbjct 8232 ACGATCAGCAGCCATTTGCA---CAACTGTACGCTGGGAAATCTCCCAAACGGTCTTGTA 8176 Query 110545 GAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCTTCAC 110604 ||| || |||||| | || || ||||| ||||||||||| || || | Sbjct 8175 CAGAGCTTTAATATCAGCAGGAATGCTAGAGATGTTCTGGATGGAGCCATTGTCCGCAAT 8116 Query 110605 CATGAGATCCTTCATATCCTTGGACCAGAGACCAA--TCTTCTTGAGGTCA--TTGACG- 110659 ||| ||| |||||| | | ||||| | ||||| || || |||||| | || | Sbjct 8115 AATGCGATTCTTCATGTTGTCAGACCATAAACCAAGATCGACT--AGGTCACGTAGAAGC 8058 Query 110660 -AGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGT 110718 ||| | ||||| | ||||| || || || | | | |||| ||||| | Sbjct 8057 CAGGGG----TTGACGACCTGGAACTCGCCAGCAAGAACGCGGCGCTGGTAAATGTTGGA 8002 Query 110719 TGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCAT 110778 |||||| ||||| ||||| ||||| || ||||| || || | ||| |||||| ||||| Sbjct 8001 TGTGTACGGTTCGAAGCACTCATTGTTGCCCAAAATCTGCGACGTGCTGGCTGTAGGCAT 7942 Query 110779 TGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATC 110838 ||||| | | |||| || || | ||| | || ||| || ||||| ||| | Sbjct 7941 GGGTGCAACTAGAAGAGAATTGCGTACACCATGCTGCTTAATCTTCTCCTTTAGAGAAGT 7882 Query 110839 CCAGTCGTA--GTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGG 110896 |||||| | | | | || || |||| | ||||||| |||||||| | | |||||| Sbjct 7881 CCAGTCCCACAGGTCA-CTAGGAGTCACAT-CCCACATATCAAACTGCAAGATGCCTTGG 7824 Query 110897 GACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTC 110956 || | |||||||||||| | ||| || | ||| | | | || | ||| Sbjct 7823 GAGACAGGAGAACCCTCATAAGTTGAGTAAGTACCCTCCGTCTGGGCGATTTCCATTGAA 7764 Query 110957 GCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCA 111016 || || | ||||| || ||||||||||| || | || | || |||||| Sbjct 7763 GCAGTTAGTGCGGCGTGGTAGATGGTTTCAAAAATCTGCTTGTTGAGCTGGCGTGCTTCA 7704 Query 111017 TCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAA 111076 || ||||| | |||| || || | || || || || || ||||| | | Sbjct 7703 GGGGATTCAAAAGGCATGCGGAGAGCAAGGAAAGCGTCAGCCAGGCCCTGTACACCGACA 7644 Query 111077 CCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTG 111136 ||||| || | ||| ||||| || || | || || || || || ||| Sbjct 7643 CCAATGGGACGGTGGCGCATGTTGCTGTTGTGAGCTTCCTGGACAGGGTAGTGATTCACA 7584 Query 111137 TCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAA 111196 || |||| |||||||| || ||||| | |||| ||| || || |||| | | Sbjct 7583 TCGATGATGCGGTTTAGGTTGCGAACAACAACTTGGGTGACTTCGTGTAGCTTTTTAAAG 7524 Query 111197 TCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAA 111256 ||| | | | | | | || | |||||||||| ||||| | ||||| Sbjct 7523 TCATACTCACCCTTGTTGTAGTCCACGAAGGAAGGAAGGGCGAGAGATGCTAGGTTGCAC 7464 Query 111257 ACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTA 111316 ||||| |||||| | |||||| | ||| || || || | ||| ||||| | Sbjct 7463 ACAGCGACCTCATCAGGGGCACAGTACTCGATAATCTCAGTGCACAGGTTCGAACTGCGA 7404 Query 111317 ATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAG 111376 || || || | ||| || || || ||||| |||||| || ||||||||||| | Sbjct 7403 ATGGTACCTAGATTTTTCTGATTGCTCTTGCGGTTGCAGTGGTCTTTGTAGAGCATAAAA 7344 Query 111377 GGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA-AACATCGGCGGCTGGTAC 111435 || | || ||||| ||||| | | ||||| || | ||| | || | | || | || Sbjct 7343 GGGTTGCCAGTCTCAGTCTGAGCCTCCAGAATGGCATACCACAGTTTCTGGGCCTTG-AC 7285 Query 111436 AATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACC 111495 || | | || |||||| |||||||||| || || || |||||||| || | Sbjct 7284 AACCATGCGACCGCGGCCCTCCTTCTCGTACTTTTCATACAGAGCCTCAAACTCTTC-GC 7226 Query 111496 CACCGC-GTCGGAGAGACCTGGTGCCTT-GTCTGGACAGAAAAGAGACCATTGACCACCT 111553 || || || | | | | || || || | || || | |||| ||| | || | | Sbjct 7225 CATAGCAATCCGCCA-AGCCGGGGCATTCATTGGGGCACATGAGAGTCCA--GTCCTCAT 7169 Query 111554 TC--CTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTA- 111610 || |||||| ||||||||||| | ||| |||||||||| | || || || | | Sbjct 7168 TCTTCTCAACACGCTTCATGAACAAGTCGCAGATCCACAGGGCCAAGAATAGGTCACGAG 7109 Query 111611 CACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCG 111670 ||| || | ||||| | || ||||| ||||| || |||||||| | || ||| || Sbjct 7108 CACGGA-CTTCTTCCTTTCCGTGGTTCTTGCGTAAGTCGAGGAACTCGAAGACATCAGCA 7050 Query 111671 TGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG---ACGCCCAGCTTGATTTACA 111727 ||||||||||| ||||| | || | | ||| ||| ||| | || | ||| Sbjct 7049 TGCCATGGCTCGAGATAAATGGCAAAGGCTCCAGGTCGCTTGTTTCCACCCTGGTCAACA 6990 Query 111728 TAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTT 111787 || || || ||| ||| || || || ||||| |||| || || | || ||| || Sbjct 6989 TAACGGGCGGTGTTGTTGAAAACACGTAGCATGGGAACGATGCCGTTCGAAGTACCGTTA 6930 Query 111788 GTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCA 111847 || || ||| ||| | |||| | | | || | | | || ||||| ||| Sbjct 6929 GTGCCAGCAATGTAAGAGCCAGTGGCACGAATACGGTGAACATTGAGACCGATACCACCA 6870 Query 111848 GCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCC 111907 ||| ||| || || ||||| | | || || | || || || | ||| ||| Sbjct 6869 GCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAAATGCCCTCGATGCTGTCA 6810 Query 111908 TCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAG 111967 ||||| || ||| ||||| || |||| ||| | || ||||| ||||| ||| Sbjct 6809 TCCTTCATGTCGACTAGGAAACATGAAGACAACTGAGCCTGGGGAGTACCGGCATTAAAG 6750 Query 111968 AGGGTTGGTGTTGCGTGAATGAA 111990 || || |||| ||||||| |||| Sbjct 6749 AGCGTAGGTGATGCGTGAGTGAA 6727 >seq101 Length=72697 Score = 105 bits (116), Expect = 8e-18 Identities = 339/520 (65%), Gaps = 7/520 (1%) Strand=Plus/Plus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || ||| || |||||||| || |||||||| || ||||||||| ||||| Sbjct 41002 GCAAAGTCGGTGTGCAGGCCCTCATCACGAGAAATAAGCTCGTTTGAGAAGGTCAGACCA 41061 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 ||||||||||| ||||| || ||| | || | | ||| | || ||||| ||||| Sbjct 41062 GGCATGAGACCACGCTTGCGCAGCCAGAAGATGGAGGCGAAGGCGCCTGAGAAAAAGATG 41121 Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTG-CATCAAA 122837 ||||| ||| ||||| |||| ||||| | ||| || | ||| | ||| | | Sbjct 41122 CCCTCGACAGCAGCAAAGGCAACTAGGCGCTGGGCAAACG-TCGACTCCTTGTCGGTGAT 41180 Query 122838 CCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAA 122897 ||| |||| ||||| | ||||| || || || | ||| | ||||| | || Sbjct 41181 CCACTTCAGAGCCCAGTCGGCCTTGCGGCGGATGCAGGGAATAGTGTCAATGGCATTGAA 41240 Query 122898 TAACTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTC 122957 | | | || || ||||| ||||| ||||||||| || || ||||| Sbjct 41241 CAGGTATGTGCGTTGCGAGGGCTCCTTGATGTAGGTGTCAATCAGCAGCGAGTAGGTTTC 41300 Query 122958 GCCATGAACCATTT-CATTATGGCATTGATATGCGTAGAATGAGCGCGCTTCGCTTATCT 123016 || | ||| ||| ||| | || | ||||||| |||| || ||| |||| Sbjct 41301 AGAGTGGATGTTTTCCATCATGATCTGGA-AACCGTAGAAGCAGCGGGCCTCGGGGATCT 41359 Query 123017 GAACCTCATCCGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAA 123076 | ||||| | | || | | || ||| || || || ||||| || |||||| Sbjct 41360 GCACCTCGCCTGAGAAGCGCTCAACGAGATTTTCGTTGACGATGCCATCAGAGGCAGCAA 41419 Query 123077 AGAATGCCAGGATGTACTTTATGAATTTCTTTTCATTTTCATTCA---GGGTCTTCCAGT 123133 |||| || || |||| ||||| | || || | || |||| || | ||||||| Sbjct 41420 AGAAGGCAAGAATGTGGGAGATGAAGTACTGCTCGTCTTTGTTCAGACGGTTGTTCCAGT 41479 Query 123134 CGTCAAGATCTTTGGACAAATCAACTTCTTCCGCAGTCCA 123173 ||| ||||| || || | ||||| || || |||||||| Sbjct 41480 CGTGGAGATCCTTAGAGAGATCAATCTCCTCAGCAGTCCA 41519 >seq76 Length=97792 Score = 87.8 bits (96), Expect = 2e-12 Identities = 210/313 (67%), Gaps = 10/313 (3%) Strand=Plus/Minus Query 11630 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 11689 ||||||||||| ||||| || | || ||||| || | ||| || | |||| ||| Sbjct 15426 GCATCAATCTCGTCAATAAAAATGATGCATGGCGCGTTCTTGCGCGCCGTAGCAAAAAGA 15367 Query 11690 TCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGT--TTGCGGCAGAGC 11747 || || || | | |||||| || ||||||||||| ||||| | || || || | Sbjct 15366 TCACGCACACGCGACGGACCCACGCCGACAAACATCTCGACAAACTCGGAGCCGCTGA-C 15308 Query 11748 ACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCG 11807 || || ||| || || ||| || || || |||| ||| || || ||||| |||| Sbjct 15307 GCT-GAAGAACGGAACGCCTGACTCGCCAGCCGTGGCCTTGGCTAGCAGCGTCTTGCCCG 15249 Query 11808 TACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC---ACTTCCAAAAT 11864 | || || |||| || | ||||| || |||||||||||||| || |||| | Sbjct 15248 TTCCCGGAGGGCCCGATAGGATAGCGCCGCGCGGGATCTTGGCACCCAGACGCACAAACT 15189 Query 11865 ATCTCTCGGGTTGCTTGAGAAAATCCACAATCTCTTCAAGTTCATCTTTGGCCGCGTCAA 11924 | ||||| | |||||| || | ||||| ||| | || | |||||| |||| | Sbjct 15188 ---TTTCGGGCTTCTTGAGGAACTGCACAAACTCCATGATCTCGACCTTGGCCTCGTCCA 15132 Query 11925 TCCCCTCAACATC 11937 | || | ||||| Sbjct 15131 TTCCGGCCACATC 15119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628022477464800