Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20platani_20[genbank_20GCA_5F000978885.1_202015-04-23]
1,213 sequences; 29,181,415 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq101 120 4e-22
>seq101
Length=72697
Score = 120 bits (132), Expect = 4e-22
Identities = 342/520 (66%), Gaps = 7/520 (1%)
Strand=Plus/Plus
Query 130016 GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 130075
||||| || ||| || ||||| ||||| || || || || || |||||| ||||||
Sbjct 41002 GCAAAGTCGGTGTGCAGGCCCTCATCACGAGAAATAAGCTCGTTTGAGAAGGTCAGACCA 41061
Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 130135
||||||||||| ||||| || |||||| || | || | ||| ||||| |||||
Sbjct 41062 GGCATGAGACCACGCTTGCGCAGCCAGAAGATGGAGGCGAAGGCGCCTGAGAAAAAGATG 41121
Query 130136 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGT-ATCAAA 130194
||||| ||| || || |||| || |||| ||||| | || | |||| |
Sbjct 41122 CCCTCGACAGCAGCAAAGGCAACTAGGCGCTGGGCAAACG-TCGACTCCTTGTCGGTGAT 41180
Query 130195 CCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAA 130254
|||||||| ||||| | ||||| ||| || || | || | || || | ||
Sbjct 41181 CCACTTCAGAGCCCAGTCGGCCTTGCGGCGGATGCAGGGAATAGTGTCAATGGCATTGAA 41240
Query 130255 GAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTC 130314
|| | | || || || || |||||||| | || || || || || |||||
Sbjct 41241 CAGGTATGTGCGTTGCGAGGGCTCCTTGATGTAGGTGTCAATCAGCAGCGAGTAGGTTTC 41300
Query 130315 GCCATGGACCATTT-CATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCT 130373
|||| ||| ||| || | ||| | ||||||| |||| || ||| ||||
Sbjct 41301 AGAGTGGATGTTTTCCATCAT-GATCTGGAAACCGTAGAAGCAGCGGGCCTCGGGGATCT 41359
Query 130374 GTACCTCATCTGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAA 130433
| ||||| ||| || | | || ||| || || || ||||| || ||||||
Sbjct 41360 GCACCTCGCCTGAGAAGCGCTCAACGAGATTTTCGTTGACGATGCCATCAGAGGCAGCAA 41419
Query 130434 AAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGT 130490
| || || || || | ||||| | ||| || | | ||||| || | |||||||
Sbjct 41420 AGAAGGCAAGAATGTGGGAGATGAAGTACTGCTCGTCTTTGTTCAGACGGTTGTTCCAGT 41479
Query 130491 CGTCAAGATCCTTCGAGAGATCTACCTCCTCCGCAGTCCA 130530
||| |||||||| |||||||| | |||||| ||||||||
Sbjct 41480 CGTGGAGATCCTTAGAGAGATCAATCTCCTCAGCAGTCCA 41519
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618425822976280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |