Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20platani_20[genbank_20GCA_5F000978885.1_202015-04-23] 1,213 sequences; 29,181,415 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq338 154 4e-32 seq3 122 3e-22 seq145 109 2e-18 seq64 107 6e-18 >seq338 Length=64627 Score = 154 bits (170), Expect = 4e-32 Identities = 175/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | ||||| | ||||||||||| ||||| ||||| || | Sbjct 52233 TTTGCATACCACCACGCAGACGCAGAACCAAGTGAAGAGTAGATTCTTTCTGAATGTTGT 52292 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || ||||| || || || ||||||||||| || ||||| ||||||| Sbjct 52293 AGTCCGAAAGGGTACGGCCATCCTCGAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGAT 52352 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || || || || || |||||||| || || | || ||||| ||||| | |||||| | Sbjct 52353 CCGGGGGGATACCCTCCTTATCCTGGATCTTGGACTTGACATTGTCAATGGTATCAGAGG 52412 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || |||| ||||| || || | || || || || || ||||| Sbjct 52413 ACTCGACTTCGAGGGTAATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 52467 Score = 147 bits (162), Expect = 7e-30 Identities = 174/236 (74%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 140502 TTTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTA 140561 |||||| |||||||| | | ||||| | |||||||||||||| || || || || Sbjct 52004 TTTTACTGGCCACCACGCAGACGCAGAACCAAGTGAAGAGTAGACTCCTTCTGGATGTTG 52063 Query 140562 TAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGA 140621 || || || | || || ||||| ||||| || ||||| || ||||| ||||| |||||| Sbjct 52064 TAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGA 52123 Query 140622 TCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGAT 140681 || ||||| || || || || ||||| || || | ||| ||||| ||||| | |||||| Sbjct 52124 TCCGGAGGGATACCCTCCTTGTCCTGGATCTTGGATTTGACATTGTCAATGGTATCAGAG 52183 Query 140682 GGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || ||||| || |||| ||||| || || | || || || || || ||||| Sbjct 52184 GACTCGACTTCGAGGGTAATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 52239 Score = 140 bits (154), Expect = 1e-27 Identities = 166/225 (74%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || || | ||||||||||| ||||| ||||| || | Sbjct 52461 TTTGCATACCACCACGCAGACGCAGGACCAAGTGAAGAGTAGATTCTTTCTGAATGTTGT 52520 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || ||||| ||||| || ||||| || ||||| ||||| ||||| | Sbjct 52521 AGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGT 52580 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | ||||| || || || || ||||| || || | || || || ||||| | || || | Sbjct 52581 CCGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAGG 52640 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAA 140727 || ||||| || |||| ||||||||||| || || || |||| Sbjct 52641 ACTCGACTTCGAGGGTAATGGTCTTTCCGGTAAGGGTCTTGACAA 52685 Score = 131 bits (144), Expect = 5e-25 Identities = 153/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || ||||| ||||||||||| || ||||| || || || Sbjct 52749 CATACCACCACGCAGGCGGAGCACTAGATGGAGAGTAGACTCCTTCTGAATGTTGTAGTC 52808 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || ||||| ||||| || |||||||| ||||| ||||| ||||| || || Sbjct 52809 GGACAGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGG 52868 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||| || || || || ||||| || |||| || || || ||||| | ||| || | || Sbjct 52869 AGGGATACCCTCCTTGTCCTGGATCTTAGACTTAACGTTGTCAATAGTATCCGAAGACTC 52928 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGT 140713 || || || || | ||||| || || Sbjct 52929 CACCTCGAGGGTGATGGTCTTGCCAGT 52955 >seq3 Length=125895 Score = 122 bits (134), Expect = 3e-22 Identities = 190/272 (70%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 349610 GCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCT 349669 ||||| |||||||| || ||||| || || || | |||||| || || || || || Sbjct 87555 GCTGTCATTACTGTCCCCGCCTACTTCAACGACTCTCAGCGTCAGGCTACCAAGGACTCT 87614 Query 349670 GGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATT 349729 || |||||| || | || || || | || ||||| || ||||||||||| || ||| Sbjct 87615 GGTCTCATTGCCGGCCTGAACGTCCTGCGTATCATTAACGAGCCCACTGCTGCTGCCATT 87674 Query 349730 GCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGT 349789 || || || ||||| || | | || || || | || || || ||| | ||| Sbjct 87675 GCCTACGGTCTTGACAAGAAGGTCGAGGGTGAGCGCAACGTCCTGATCTTCGATCTGGGT 87734 Query 349790 GGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCA 349849 ||||||||||| ||||| || || || || |||| || || || || || || || | Sbjct 87735 GGTGGTACTTTCGATGTCTCGCTGCTGACCATTGAGGACGGTATCTTCGAGGTCAAGTCC 87794 Query 349850 ACTGCTGGTGATACACATCTTGGTGGAGAAGA 349881 || |||||||| || ||||| ||||| || || Sbjct 87795 ACCGCTGGTGACACCCATCTGGGTGGTGAGGA 87826 >seq145 Length=91869 Score = 109 bits (120), Expect = 2e-18 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609 || ||||| || || ||||| | || || ||||| || || || || ||||| ||||| Sbjct 6022 TTCTGAATGTTGTAGTCAGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 6081 Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669 || || ||||| || || ||||| || || || |||||||| || | || ||||| || Sbjct 6082 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCG 6141 Query 140670 ATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAA 140729 || | || || | ||||| || || |||| ||||| || || || || || || ||| Sbjct 6142 ATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGAAA 6201 Query 140730 ATCTGCAT 140737 |||||||| Sbjct 6202 ATCTGCAT 6209 >seq64 Length=146407 Score = 107 bits (118), Expect = 6e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 140508 ATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCA 140567 ||||||||||| | | || ||||| || || || ||||| || || || || || || Sbjct 70967 ATACCACCACGCAGGCGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 70908 Query 140568 GATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGA 140627 || | || || ||||| ||||| || || ||||||||||| | || ||||| || || Sbjct 70907 GACAGAGTGCGGCCATCCTCAAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCCGGG 70848 Query 140628 GGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCA 140687 ||||| || || || ||||| || || | || || || || |||| || || | || Sbjct 70847 GGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAAGACTCG 70788 Query 140688 ACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAA 140729 || || || |||| ||||| || || || || || || ||| Sbjct 70787 ACCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAAA 70746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515230850579039