Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20platani_20[genbank_20GCA_5F000978885.1_202015-04-23]
1,213 sequences; 29,181,415 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq338 154 4e-32
seq3 122 3e-22
seq145 109 2e-18
seq64 107 6e-18
>seq338
Length=64627
Score = 154 bits (170), Expect = 4e-32
Identities = 175/235 (74%), Gaps = 0/235 (0%)
Strand=Plus/Plus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| |||||||||||| | | ||||| | ||||||||||| ||||| ||||| || |
Sbjct 52233 TTTGCATACCACCACGCAGACGCAGAACCAAGTGAAGAGTAGATTCTTTCTGAATGTTGT 52292
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
| || || | || || ||||| || || || ||||||||||| || ||||| |||||||
Sbjct 52293 AGTCCGAAAGGGTACGGCCATCCTCGAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGAT 52352
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682
| || || || || || |||||||| || || | || ||||| ||||| | |||||| |
Sbjct 52353 CCGGGGGGATACCCTCCTTATCCTGGATCTTGGACTTGACATTGTCAATGGTATCAGAGG 52412
Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| ||||| || |||| ||||| || || | || || || || || |||||
Sbjct 52413 ACTCGACTTCGAGGGTAATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 52467
Score = 147 bits (162), Expect = 7e-30
Identities = 174/236 (74%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 140502 TTTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTA 140561
|||||| |||||||| | | ||||| | |||||||||||||| || || || ||
Sbjct 52004 TTTTACTGGCCACCACGCAGACGCAGAACCAAGTGAAGAGTAGACTCCTTCTGGATGTTG 52063
Query 140562 TAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGA 140621
|| || || | || || ||||| ||||| || ||||| || ||||| ||||| ||||||
Sbjct 52064 TAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGA 52123
Query 140622 TCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGAT 140681
|| ||||| || || || || ||||| || || | ||| ||||| ||||| | ||||||
Sbjct 52124 TCCGGAGGGATACCCTCCTTGTCCTGGATCTTGGATTTGACATTGTCAATGGTATCAGAG 52183
Query 140682 GGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
| || ||||| || |||| ||||| || || | || || || || || |||||
Sbjct 52184 GACTCGACTTCGAGGGTAATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 52239
Score = 140 bits (154), Expect = 1e-27
Identities = 166/225 (74%), Gaps = 0/225 (0%)
Strand=Plus/Plus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| |||||||||||| | | || || | ||||||||||| ||||| ||||| || |
Sbjct 52461 TTTGCATACCACCACGCAGACGCAGGACCAAGTGAAGAGTAGATTCTTTCTGAATGTTGT 52520
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
| || || | || || ||||| ||||| || ||||| || ||||| ||||| ||||| |
Sbjct 52521 AGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGT 52580
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682
| ||||| || || || || ||||| || || | || || || ||||| | || || |
Sbjct 52581 CCGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAGG 52640
Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAA 140727
|| ||||| || |||| ||||||||||| || || || ||||
Sbjct 52641 ACTCGACTTCGAGGGTAATGGTCTTTCCGGTAAGGGTCTTGACAA 52685
Score = 131 bits (144), Expect = 5e-25
Identities = 153/207 (74%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | || || ||||| ||||||||||| || ||||| || || ||
Sbjct 52749 CATACCACCACGCAGGCGGAGCACTAGATGGAGAGTAGACTCCTTCTGAATGTTGTAGTC 52808
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | || || ||||| ||||| || |||||||| ||||| ||||| ||||| || ||
Sbjct 52809 GGACAGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGG 52868
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
||| || || || || ||||| || |||| || || || ||||| | ||| || | ||
Sbjct 52869 AGGGATACCCTCCTTGTCCTGGATCTTAGACTTAACGTTGTCAATAGTATCCGAAGACTC 52928
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGT 140713
|| || || || | ||||| || ||
Sbjct 52929 CACCTCGAGGGTGATGGTCTTGCCAGT 52955
>seq3
Length=125895
Score = 122 bits (134), Expect = 3e-22
Identities = 190/272 (70%), Gaps = 0/272 (0%)
Strand=Plus/Plus
Query 349610 GCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCT 349669
||||| |||||||| || ||||| || || || | |||||| || || || || ||
Sbjct 87555 GCTGTCATTACTGTCCCCGCCTACTTCAACGACTCTCAGCGTCAGGCTACCAAGGACTCT 87614
Query 349670 GGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATT 349729
|| |||||| || | || || || | || ||||| || ||||||||||| || |||
Sbjct 87615 GGTCTCATTGCCGGCCTGAACGTCCTGCGTATCATTAACGAGCCCACTGCTGCTGCCATT 87674
Query 349730 GCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGT 349789
|| || || ||||| || | | || || || | || || || ||| | |||
Sbjct 87675 GCCTACGGTCTTGACAAGAAGGTCGAGGGTGAGCGCAACGTCCTGATCTTCGATCTGGGT 87734
Query 349790 GGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCA 349849
||||||||||| ||||| || || || || |||| || || || || || || || |
Sbjct 87735 GGTGGTACTTTCGATGTCTCGCTGCTGACCATTGAGGACGGTATCTTCGAGGTCAAGTCC 87794
Query 349850 ACTGCTGGTGATACACATCTTGGTGGAGAAGA 349881
|| |||||||| || ||||| ||||| || ||
Sbjct 87795 ACCGCTGGTGACACCCATCTGGGTGGTGAGGA 87826
>seq145
Length=91869
Score = 109 bits (120), Expect = 2e-18
Identities = 137/188 (73%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609
|| ||||| || || ||||| | || || ||||| || || || || ||||| |||||
Sbjct 6022 TTCTGAATGTTGTAGTCAGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 6081
Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669
|| || ||||| || || ||||| || || || |||||||| || | || ||||| ||
Sbjct 6082 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCG 6141
Query 140670 ATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAA 140729
|| | || || | ||||| || || |||| ||||| || || || || || || |||
Sbjct 6142 ATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGAAA 6201
Query 140730 ATCTGCAT 140737
||||||||
Sbjct 6202 ATCTGCAT 6209
>seq64
Length=146407
Score = 107 bits (118), Expect = 6e-18
Identities = 157/222 (71%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 140508 ATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCA 140567
||||||||||| | | || ||||| || || || ||||| || || || || || ||
Sbjct 70967 ATACCACCACGCAGGCGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 70908
Query 140568 GATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGA 140627
|| | || || ||||| ||||| || || ||||||||||| | || ||||| || ||
Sbjct 70907 GACAGAGTGCGGCCATCCTCAAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCCGGG 70848
Query 140628 GGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCA 140687
||||| || || || ||||| || || | || || || || |||| || || | ||
Sbjct 70847 GGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAAGACTCG 70788
Query 140688 ACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAA 140729
|| || || |||| ||||| || || || || || || |||
Sbjct 70787 ACCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAAA 70746
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515230850579039
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |