Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20platani_20[genbank_20GCA_5F000978885.1_202015-04-23]
1,213 sequences; 29,181,415 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq411 351 1e-91
>seq411
Length=11963
Score = 351 bits (388), Expect = 1e-91
Identities = 880/1328 (66%), Gaps = 28/1328 (2%)
Strand=Plus/Minus
Query 78507 GAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGTTGGTCGTGTACGGCTCGAAAGCCTC 78566
||||||||| || || |||||| |||| ||||||| |||||||| ||||| |||
Sbjct 8040 GAACTCGCCAGCAAGAACGCGGCGCTGGTAAATGTTGGATGTGTACGGTTCGAAGCACTC 7981
Query 78567 GTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGCATGGGTGCGACCAGTAGAGAATT 78626
||||| |||| ||||| | || ||| || ||||||||||| || || ||||||||
Sbjct 7980 ATTGTTGCCCAAAATCTGCGACGTGCTGGCTGTAGGCATGGGTGCAACTAGAAGAGAATT 7921
Query 78627 CCGAAGACCATGCGTCTTGATCTCGACCTTTAGG------CCGTCCCAAAATTCATTCGC 78680
|| | ||||||| ||| |||| ||||||| | |||||| | ||| | |
Sbjct 7920 GCGTACACCATGCTGCTTAATCTTCTCCTTTAGAGAAGTCCAGTCCCACAGGTCACTAGG 7861
Query 78681 CGCGATCCCCCACATGTCCGGTTGAAGGATACCCTCGGACGCCGGCGACCCCTTGAACGT 78740
| | ||||||| || || | ||| || | ||| | || || |||| | ||
Sbjct 7860 AGTCACATCCCACATATCAAACTGCAAGATGCCTTGGGAGACAGGAGAACCCTCATAAGT 7801
Query 78741 CTCGTAAGATCCCTCCTCCTTGGCGAGTTCGCATGACTCGAGCAGGGCCGCGTGGTACAC 78800
||||| |||||| || ||||| ||| ||| | || || |||||||| |
Sbjct 7800 TGAGTAAGTACCCTCCGTCTGGGCGATTTCCATTGAAGCAGTTAGTGCGGCGTGGTAGAT 7741
Query 78801 AGCCTCGAAGATGCCCTTGTTGAGCTCGCGCGCCTTGGTCTCGTCGAACGAAAGGCCGAG 78860
| || || || ||||||||||| ||| || | | || || | | || |||
Sbjct 7740 GGTTTCAAAAATCTGCTTGTTGAGCTGGCGTGCTTCAGGGGATTCAAAAGGCATGCGGAG 7681
Query 78861 CATCATGAAGACATCGGCCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCATGTT 78920
| ||| | || ||||||||||| || |||| | | || || ||||||||||||||
Sbjct 7680 AGCAAGGAAAGCGTCAGCCAGGCCCTGTACACCGACACCAATGGGACGGTGGCGCATGTT 7621
Query 78921 GCTCTTTCGGGCCGCCTCGGTCGGGTAAAAGTTCCGATCGATGACGCGGTTCAGGTTACG 78980
||| || | || ||| | ||||| ||| |||||||| |||||| ||||| ||
Sbjct 7620 GCTGTTGTGAGCTTCCTGGACAGGGTAGTGATTCACATCGATGATGCGGTTTAGGTTGCG 7561
Query 78981 CGTGACGACCCGAGTCACCTCGTACAATTTGGCGAAATCAAAATGATTTCCTT--TG--- 79035
|| || | || || |||| | || || ||| | | | |||| ||
Sbjct 7560 AACAACAACTTGGGTGACTTCGTGTAGCTTTTTAAAGTCATACTCAC--CCTTGTTGTAG 7503
Query 79036 ---ATGAAAGTCGGTAGGCACAGCGATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTA 79092
| ||| | || ||| || ||||| ||||||||||| || ||| || ||| |
Sbjct 7502 TCCACGAAGGAAGGAAGGGCGAGAGATGCTAGGTTGCACACAGCGACCTCATCAGGGGCA 7443
Query 79093 GAAACCTCGATGATTTCTGTGCACAAATTAGACGACTTG--ATGGTGCCGATGTTCTTCT 79150
| |||||| || || ||||||| || || ||| ||||| || | || ||||
Sbjct 7442 CAGTACTCGATAATCTCAGTGCACAGGTTCGA--ACTGCGAATGGTACCTAGATTTTTCT 7385
Query 79151 GGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCT 79210
| |||||||| ||| ||| ||| |||||| ||| | || | || |||||| ||
Sbjct 7384 GATTGCTCTTGCGGTTGCAGTGGTCTTTGTAGAGCATAAAAGGGTTGCCAGTCTCAGTCT 7325
Query 79211 GACTCTTGAGAACGCCGTCCCAGATGTCCCGGGCCCGGACAACCTTCTTGTACCGACCCT 79270
|| || |||| | | | ||| | | | ||||| ||||||| | || ||||
Sbjct 7324 GAGCCTCCAGAATGGCATACCACAGTTTCTGGGCCTTGACAACCATGCGACCGCGGCCCT 7265
Query 79271 GTGCGACGTACGTCCGGTACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCG 79330
||||| | |||| | | || | || |||||| ||| | || ||| |
Sbjct 7264 CCTTCTCGTACTTTTCATACAGAGCCTCAAACTCTTCGCCATAGCAATCCGCCAAGCCGG 7205
Query 79331 GGCACTCGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGA 79390
|||| || | |||||||| || ||||||||| | ||||||||| || |||||| |
Sbjct 7204 GGCATTCATTGGGGCACATGAGAGTCCAGTCCTCATTCTTCTCAACACGCTTCATGAACA 7145
Query 79391 GGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGT 79450
||| ||||||||||||| ||| ||||| || ||| | || || | || ||||
Sbjct 7144 AGTCGCAGATCCACAGGGCCAAGAATAGGTCACGAGCACGGACTTCTTCCTTTCCGTGGT 7085
Query 79451 TCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGA 79510
|| || | ||||| || || | || || || ||||| ||||| ||||| ||||| |
Sbjct 7084 TCTTGCGTAAGTCGAGGAACTCGAAGACATCAGCATGCCATGGCTCGAGATAAATGGCAA 7025
Query 79511 ACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTC 79570
| | || |||||| || ||||||| || || ||||| |||||||||||||| |
Sbjct 7024 AGGCTCCAGGTCGCTTGTTTCCACCCTGGTCAACATAACGGGCGGTGTTGTTGAAAACAC 6965
Query 79571 GGAGCATGGGCACGATGCCGTCGGCGACG--CCGTTCGTCCCGTTGATTCGTGTACCGCT 79628
| |||||||| |||||||||| ||| | ||||| || || || | || |
Sbjct 6964 GTAGCATGGGAACGATGCCGT--TCGAAGTACCGTTAGTGCCAGCAATGTAAGAGCCAGT 6907
Query 79629 CGCCCGAAT--GTTCGAGCAGTGGATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCG 79686
|| ||||| | | || || | || ||||| || || | | |||||| || ||
Sbjct 6906 GGCACGAATACGGT-GAACA-TTGAGACCGATACCACCAGCCATCTTGGAAATCATGGCA 6849
Query 79687 CACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAG 79746
|| |||||| || ||||| ||||||||||| ||| |||||||| |||| |||||
Sbjct 6848 CAAGTCTTGAGGGTATCGTAAATGCCCTCGATGCTGTCATCCTTCATGTCGACTAGGAAA 6789
Query 79747 CAGCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTG 79806
|| |||| ||| | | | |||||||| || ||||| || || | ||||| |||
Sbjct 6788 CATGAAGACAACTGAGCCTGGGGAGTACCGGCATTAAAGAGCGTAGGTGATGCGTGAGTG 6729
Query 79807 AAGAACTT 79814
||||||||
Sbjct 6728 AAGAACTT 6721
Score = 230 bits (254), Expect = 3e-55
Identities = 870/1354 (64%), Gaps = 32/1354 (2%)
Strand=Plus/Plus
Query 19166 GAGACATACGACCTGATGAGCCAG-AAGTTCTTCACGCACGCGACGCCGACCCTTTTCAA 19224
|| || ||| |||| ||| | || ||||||||||| ||||| | || || || || ||
Sbjct 6697 GAAACCTACAACCTTATGT-CTAGCAAGTTCTTCACTCACGCATCACCTACGCTCTTTAA 6755
Query 19225 CGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAG 19284
|||||||| | | | ||| |||| ||||||||||| | ||||||||||||||
Sbjct 6756 TGCCGGTACTCCCCAGGCTCAGTTGTCTTCATGTTTCCTAGTCGACATGAAGGATGACAG 6815
Query 19285 CATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGG 19344
||| |||||||| ||||| || |||||| || || || |||||| | | || ||
Sbjct 6816 CATCGAGGGCATTTACGATACCCTCAAGACTTGTGCCATGATTTCCAAGATGGCTGGTGG 6875
Query 19345 TATCGGGATCCACTGCTCGAA-TATCCGGTCGAGTGGTACACGAATCAATGGGACGAACG 19403
|||||| || | || || ||| || | | ||| | || ||| || ||||
Sbjct 6876 TATCGGTCTCAA-TGTTCACCGTATTCGTGCCACTGGCTCTTACATTGCTGGCACTAACG 6934
Query 19404 GAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCA 19463
| | |||| ||||| || ||||| || || ||||||||||| ||| | || ||
Sbjct 6935 GTACTTCGAACGGCATCGTTCCCATGCTACGTGTTTTCAACAACACCGCCCGTTATGTTG 6994
Query 19464 ACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGG 19523
||||||| || ||| || || | || ||||| || |||||||||||||| || |
Sbjct 6995 ACCAGGGTGGAAACAAGCGACCTGGAGCCTTTGCCATTTATCTCGAGCCATGGCATGCTG 7054
Query 19524 ACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCG 19583
| ||| | || |||||||| | ||| |||||| || | || || | || ||| |
Sbjct 7055 ATGTCTTCGAGTTCCTCGACTTACGCAAGAACCACGGAAAGGAAGAAGTCCGTGCTCGTG 7114
Query 19584 ACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAG 19643
|||| ||| |||| ||||||| ||| | |||||| || ||||||||| | || |
Sbjct 7115 ACCTATTCTTGGCCCTGTGGATCTGCGACTTGTTCATGAAGCGTGTTGAGAAGAATGAGG 7174
Query 19644 AATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGT 19703
| ||| || |||||||| | |||||||| ||| | | || ||| ||||| | ||
Sbjct 7175 ACTGGACTCTCATGTGCCCCAATGAATGCCCCGGCTTGGCGGATTGCTATGGCGAAGAGT 7234
Query 19704 TCAATGAGTTGTACCGGACTTACGTAGCCCAGGGCCG-GTTCAAGAAGGTGGTCCGGGCC 19762
| | | |||| | |||| ||||||| | || | ||| ||| ||||
Sbjct 7235 TTGAGGCTCTGTATGAAAAGTACGAGAAGGAGGGCCGCGGTC-GCATGGTTGTCAAGGCC 7293
Query 19763 CGGGACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGTACATGTGC 19822
| | | | ||| | | | || | ||| ||||| |||| || | ||| |
Sbjct 7294 CAGAAACTGTGGTATGCCATTCTGGAGGCTCAGACTGAGACTGGCAACCCTTTTATGCTC 7353
Query 19823 TACAAGGACGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGAT--CAAGTCGT 19880
||||| ||| | ||| |||| |||||||| || | || | || ||| |
Sbjct 7354 TACAAAGACCACTGCAACCGCAAGAGCAATCAGAAAAATCTAGGTACCATTCGCAGT--T 7411
Query 19881 CCAACCTGTGTACTGAAATCATGGAGGTTTCCAAGCCGGACGAGACTGCCGTGTGTAATC 19940
| |||||||| ||||| || || ||| | || || ||| || ||||| || |
Sbjct 7412 CGAACCTGTGCACTGAGATTATCGAGTACTGTGCCCCTGATGAGGTCGCTGTGTGCAACC 7471
Query 19941 TGGCGTCCCTGTGCCTGCCGACTTTCGTCAAGGCCTCCTCC---------TTCGACTTTG 19991
| || || || ||| || | ||||| || || | | | ||||||
Sbjct 7472 TAGCATCTCTCGCCCTTCCTTCCTTCGT---GGACTACAACAAGGGTGAGTATGACTTTA 7528
Query 19992 CCAAATTGTACGAGGTGACCCGGGTCGTCACGCGTAATCTGAATCGCGTCATCGATCGGA 20051
|| | |||| || |||| || || || || || || ||| |||||||| ||
Sbjct 7529 AAAAGCTACACGAAGTCACCCAAGTTGTTGTTCGCAACCTAAACCGCATCATCGATGTGA 7588
Query 20052 ACTTTTACCCGACCGAGGCGGCGCGCAAGTCGAATATGCGCCACCGGCCGATCGCGATCG 20111
| ||||| | ||| || | ||| || ||||||||||| || || | |||
Sbjct 7589 ATCACTACCCTGTCCAGGAAGCTCACAACAGCAACATGCGCCACCGTCCCATTGGTGTCG 7648
Query 20112 GCGTCCAGGGCCTGGCCGACGTTTTCATGATGCTCGGCCTCTCATTCGACGATCCC--AA 20169
| || ||||||||||| |||| |||| | ||| || | | || || ||||| |
Sbjct 7649 GTGTACAGGGCCTGGCTGACGCTTTCCTTGCTCTCCGCATGCCTTTTGA--ATCCCCTGA 7706
Query 20170 GGCGCGCGAGCTCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCTCCTGGAATC 20229
|| ||| ||||||||||| || || || || | |||||||| || || | ||
Sbjct 7707 AGCACGCCAGCTCAACAAGCAGATTTTTGAAACCATCTACCACGCCGCACTAACTGCTTC 7766
Query 20230 GTGCGAACTCGCCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCGCCCGCGTCCGA 20289
||| ||||| | ||| || | ||| || | |||| || || | ||| |
Sbjct 7767 AATGGAAATCGCCCAGACGGAGGGTACTTACTCAACTTATGAGGGTTCTCCTGTCTCCCA 7826
Query 20290 GGGTATCCTCCAGCCGGACATGTGGGGCGTCACTGAGAATGA------GTTTTGGAGCGC 20343
|| ||| | ||| || ||||||| || ||| | ||| | |||| |
Sbjct 7827 AGGCATCTTGCAGTTTGATATGTGGGATGTGACTCCTAGTGACCTGTGGGACTGGACTTC 7886
Query 20344 CCTCAAGGTTGAGATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCATGCC 20403
|| |||| |||| ||| || || | ||||| || | || || || ||||||||
Sbjct 7887 TCTAAAGGAGAAGATTAAGCAGCATGGTGTACGCAATTCTCTTCTAGTTGCACCCATGCC 7946
Query 20404 GACCGCCTCGACCGCCCAGATCATGGGGAACAACGAGGCTTTCGAGCCGTACACGACCAA 20463
|| ||| || | ||||| |||| ||||| ||| ||||| |||||||| ||||
Sbjct 7947 TACAGCCAGCACGTCGCAGATTTTGGGCAACAATGAGTGCTTCGAACCGTACACATCCAA 8006
Query 20464 CATCTACTTGCGTCGTACACTGGCCGGTGAGTTC 20497
||| ||| ||| || || || || ||||||
Sbjct 8007 CATTTACCAGCGCCGCGTTCTTGCTGGCGAGTTC 8040
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548516482992720
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