Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20platani_20[genbank_20GCA_5F000978885.1_202015-04-23]
1,213 sequences; 29,181,415 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq411 183 3e-41
seq160 100 3e-16
>seq411
Length=11963
Score = 183 bits (202), Expect = 3e-41
Identities = 404/596 (68%), Gaps = 16/596 (3%)
Strand=Plus/Plus
Query 53195 ATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACGAC 53254
||||| || || ||||||| |||||| | | ||||| | ||| || ||| ||
Sbjct 6649 ATGCGTGTTGCTGTGGGTATTTGGGGTGACAAAGTCGATCGTGTGCTTGAAACCTACAAC 6708
Query 53255 TTAATG---AGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACG 53311
| ||| ||| |||| ||| || ||||| | || || || || || || |||||
Sbjct 6709 CTTATGTCTAGC---AAGTTCTTCACTCACGCATCACCTACGCTCTTTAATGCCGGTACT 6765
Query 53312 AATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGC 53371
|| ||||| |||| || ||||| || | |||||||||||| ||||| |||
Sbjct 6766 CCCCAGGCTCAGTTGTCTTCATGTTTCCTAGTCGACATGAAGGATGACAGCATCGAGGGC 6825
Query 53372 ATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATC 53431
|| ||||| || |||||| |||||| || |||||| | | |||||||||||| ||
Sbjct 6826 ATTTACGATACCCTCAAGACTTGTGCCATGATTTCCAAGATGGCTGGTGGTATCGGTCTC 6885
Query 53432 CACTGCTCGAACGTC--CGTGCGAACGGCACACCAATCAAGGGGACGAACGG--CGTCGC 53487
| || || | ||| ||||| | ||| | || || || ||||| | |||
Sbjct 6886 AA-TGTTC-ACCGTATTCGTGCCACTGGCTCTTACATTGCTGGCACTAACGGTACTTCGA 6943
Query 53488 CGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGG 53547
| || ||||| || ||||| || || ||||||||||| ||||| || || |||||||
Sbjct 6944 --ACGGCATCGTTCCCATGCTACGTGTTTTCAACAACACCGCCCGTTATGTTGACCAGGG 7001
Query 53548 TGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTAT 53607
||| ||||| || | || ||||| || |||||||| ||||| || || | |
Sbjct 7002 TGGAAACAAGCGACCTGGAGCCTTTGCCATTTATCTCGAGCCATGGCATGCTGATGTCTT 7061
Query 53608 GGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGT 53666
||||| ||||| | || ||| || || | ||||| | || ||| |||||||| |
Sbjct 7062 CGAGTTCCTCGACTTACGCAAGAACCACGGAAAGGAAGAAGTCCG-TGCTCGTGACCTAT 7120
Query 53667 TTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGT 53726
| || |||||||| ||| | |||||| | || |||||| | ||||| |||
Sbjct 7121 TCTTGGCCCTGTGGATCTGCGACTTGTTCATGAAGCGTGTTGAGAAGAATGAGGACTGGA 7180
Query 53727 ACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTT 53782
|| |||||||| || || ||||||||| | || | ||| || || ||||||
Sbjct 7181 CTCTCATGTGCCCCAATGAATGCCCCGGCTTGGCGGATTGCTATGGCGAAGAGTTT 7236
Score = 89.7 bits (98), Expect = 6e-13
Identities = 300/447 (67%), Gaps = 25/447 (6%)
Strand=Plus/Plus
Query 55482 TACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCA 55541
||||||| || || || || || || ||||| || || ||| | ||||| ||||||
Sbjct 7916 TACGCAATTCTCTTCTAGTTGCACCCATGCCTACAGCCAGCACGTCGCAGATTTTGGGCA 7975
Query 55542 ACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTG 55601
|||| ||| ||||| |||||||| ||||||| |||| |||||| || || || |
Sbjct 7976 ACAATGAGTGCTTCGAACCGTACACATCCAACATTTACCAGCGCCGCGTTCTTGCTGGCG 8035
Query 55602 AGTTTGTCATGATCAACAAGCACCTCG--TCAAGG--ACCTGCAGAAGATCAACAAGTGG 55657
|||| || | || ||| | ||| | || | | |||| || |||| |
Sbjct 8036 AGTTC--CAGG-TCGTCAACC-CCTGGCTTCTACGTGACCT--AGTCGATCTTGGTTTAT 8089
Query 55658 AACCCGC--AGATCAAGA--CGGATATTGTGCGGAACGGGGGGTCCGTCCAGAA--TCTG 55711
| | | || |||| || || | |||||| | || ||| ||||||| |||
Sbjct 8090 GGTCTGACAACATGAAGAATCGCATTAT-TGCGGA-CAATGGCTCCATCCAGAACATCTC 8147
Query 55712 GAG-ATTCCT-CTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGA--A 55767
|| |||||| ||| | | || | | ||| ||| || ||||||||| | ||| |
Sbjct 8148 TAGCATTCCTGCTGA-TATTAAAGCTCTGTACAAGACCGTTTGGGAGATTTCCCAGCGTA 8206
Query 55768 GAGTCTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAA 55827
||| || | | ||| ||||||||||||||| | ||| ||||| || |||||||| ||
Sbjct 8207 CAGT-TG-TGCAAATGGCTGCTGATCGTGGTGCTTTCATTGACCAATCGCAGTCTCTAAA 8264
Query 55828 CATCTTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAA 55887
||| |||| | |||| | ||| |||| | | | ||||||||| || |||||
Sbjct 8265 CATTCACATGAAAGATCCCACCATGGGCAAGATCACCAGCATGCACTTTGCTGGCTGGAA 8324
Query 55888 GAAGGGACTCAAGACGGGTATGTACTA 55914
|| ||||||||||| ||||||||
Sbjct 8325 ACTAGGTCTCAAGACGGGCATGTACTA 8351
Score = 82.4 bits (90), Expect = 8e-11
Identities = 107/148 (72%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 55096 TGACTTTGACAAGCTTCACGAAGTGACGCGTGTTGTGACTCGGAACCTGAACCGGGTCAT 55155
||||||| | ||||| |||||||| || | ||||| ||| ||||| ||||| ||||
Sbjct 7521 TGACTTTAAAAAGCTACACGAAGTCACCCAAGTTGTTGTTCGCAACCTAAACCGCATCAT 7580
Query 55156 CGACAAGAATTACTACCCGACTGAAGCGGCGCGCAAGTCCAACCTCCGGCACCGGCCCAT 55215
||| |||| ||||||| | | || | ||| |||| | || ||||| |||||
Sbjct 7581 CGATGTGAATCACTACCCTGTCCAGGAAGCTCACAACAGCAACATGCGCCACCGTCCCAT 7640
Query 55216 CGCCATCGGTGTACAGGGCTTGGCCGAC 55243
| |||||||||||||| |||| |||
Sbjct 7641 TGGTGTCGGTGTACAGGGCCTGGCTGAC 7668
>seq160
Length=132817
Score = 100 bits (110), Expect = 3e-16
Identities = 172/248 (69%), Gaps = 4/248 (2%)
Strand=Plus/Plus
Query 117326 GCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTC 117385
||||||||| |||||||||||||||| |||||| | ||||| ||||||| |||
Sbjct 25449 GCAGCATCCGAACCACCAGCAAGACGCGAACCGAAGTTACCACTGGGCTCCAGACAGTTT 25508
Query 117386 AGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCC 117445
| |||||||| || ||||||| ||||||| | ||| || ||| ||| |
Sbjct 25509 ATGTTGTTGGAACCGACAAAGTCCTGAGCCAGACCAATAATGGTTTGTTGTAGGGATACT 25568
Query 117446 TCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATG 117505
|| || || || || | || || | | || | || ||||||| | | ||||||||
Sbjct 25569 TCTCCGTGTTGGTAGGAGGTATGTCCAGAAACAAAACCAGCCAGCTCAACAACCTTCATA 25628
Query 117506 TC--TGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCA 117563
|| ||| | ||| || ||| ||| || ||||| ||||| ||||||| ||||| |
Sbjct 25629 TCCTGGAC--AATGTTTTTGCTGAAGCACGCGTAAATGACCTTCCGCTGACCAGGCTTAA 25686
Query 117564 GACCATCC 117571
||||||
Sbjct 25687 AGCCATCC 25694
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547207702837400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |