Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20platani_20[genbank_20GCA_5F000978885.1_202015-04-23] 1,213 sequences; 29,181,415 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq411 183 3e-41 seq160 100 3e-16 >seq411 Length=11963 Score = 183 bits (202), Expect = 3e-41 Identities = 404/596 (68%), Gaps = 16/596 (3%) Strand=Plus/Plus Query 53195 ATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACGAC 53254 ||||| || || ||||||| |||||| | | ||||| | ||| || ||| || Sbjct 6649 ATGCGTGTTGCTGTGGGTATTTGGGGTGACAAAGTCGATCGTGTGCTTGAAACCTACAAC 6708 Query 53255 TTAATG---AGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACG 53311 | ||| ||| |||| ||| || ||||| | || || || || || || ||||| Sbjct 6709 CTTATGTCTAGC---AAGTTCTTCACTCACGCATCACCTACGCTCTTTAATGCCGGTACT 6765 Query 53312 AATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGC 53371 || ||||| |||| || ||||| || | |||||||||||| ||||| ||| Sbjct 6766 CCCCAGGCTCAGTTGTCTTCATGTTTCCTAGTCGACATGAAGGATGACAGCATCGAGGGC 6825 Query 53372 ATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATC 53431 || ||||| || |||||| |||||| || |||||| | | |||||||||||| || Sbjct 6826 ATTTACGATACCCTCAAGACTTGTGCCATGATTTCCAAGATGGCTGGTGGTATCGGTCTC 6885 Query 53432 CACTGCTCGAACGTC--CGTGCGAACGGCACACCAATCAAGGGGACGAACGG--CGTCGC 53487 | || || | ||| ||||| | ||| | || || || ||||| | ||| Sbjct 6886 AA-TGTTC-ACCGTATTCGTGCCACTGGCTCTTACATTGCTGGCACTAACGGTACTTCGA 6943 Query 53488 CGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGG 53547 | || ||||| || ||||| || || ||||||||||| ||||| || || ||||||| Sbjct 6944 --ACGGCATCGTTCCCATGCTACGTGTTTTCAACAACACCGCCCGTTATGTTGACCAGGG 7001 Query 53548 TGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTAT 53607 ||| ||||| || | || ||||| || |||||||| ||||| || || | | Sbjct 7002 TGGAAACAAGCGACCTGGAGCCTTTGCCATTTATCTCGAGCCATGGCATGCTGATGTCTT 7061 Query 53608 GGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGT 53666 ||||| ||||| | || ||| || || | ||||| | || ||| |||||||| | Sbjct 7062 CGAGTTCCTCGACTTACGCAAGAACCACGGAAAGGAAGAAGTCCG-TGCTCGTGACCTAT 7120 Query 53667 TTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGT 53726 | || |||||||| ||| | |||||| | || |||||| | ||||| ||| Sbjct 7121 TCTTGGCCCTGTGGATCTGCGACTTGTTCATGAAGCGTGTTGAGAAGAATGAGGACTGGA 7180 Query 53727 ACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTT 53782 || |||||||| || || ||||||||| | || | ||| || || |||||| Sbjct 7181 CTCTCATGTGCCCCAATGAATGCCCCGGCTTGGCGGATTGCTATGGCGAAGAGTTT 7236 Score = 89.7 bits (98), Expect = 6e-13 Identities = 300/447 (67%), Gaps = 25/447 (6%) Strand=Plus/Plus Query 55482 TACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCA 55541 ||||||| || || || || || || ||||| || || ||| | ||||| |||||| Sbjct 7916 TACGCAATTCTCTTCTAGTTGCACCCATGCCTACAGCCAGCACGTCGCAGATTTTGGGCA 7975 Query 55542 ACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTG 55601 |||| ||| ||||| |||||||| ||||||| |||| |||||| || || || | Sbjct 7976 ACAATGAGTGCTTCGAACCGTACACATCCAACATTTACCAGCGCCGCGTTCTTGCTGGCG 8035 Query 55602 AGTTTGTCATGATCAACAAGCACCTCG--TCAAGG--ACCTGCAGAAGATCAACAAGTGG 55657 |||| || | || ||| | ||| | || | | |||| || |||| | Sbjct 8036 AGTTC--CAGG-TCGTCAACC-CCTGGCTTCTACGTGACCT--AGTCGATCTTGGTTTAT 8089 Query 55658 AACCCGC--AGATCAAGA--CGGATATTGTGCGGAACGGGGGGTCCGTCCAGAA--TCTG 55711 | | | || |||| || || | |||||| | || ||| ||||||| ||| Sbjct 8090 GGTCTGACAACATGAAGAATCGCATTAT-TGCGGA-CAATGGCTCCATCCAGAACATCTC 8147 Query 55712 GAG-ATTCCT-CTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGA--A 55767 || |||||| ||| | | || | | ||| ||| || ||||||||| | ||| | Sbjct 8148 TAGCATTCCTGCTGA-TATTAAAGCTCTGTACAAGACCGTTTGGGAGATTTCCCAGCGTA 8206 Query 55768 GAGTCTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAA 55827 ||| || | | ||| ||||||||||||||| | ||| ||||| || |||||||| || Sbjct 8207 CAGT-TG-TGCAAATGGCTGCTGATCGTGGTGCTTTCATTGACCAATCGCAGTCTCTAAA 8264 Query 55828 CATCTTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAA 55887 ||| |||| | |||| | ||| |||| | | | ||||||||| || ||||| Sbjct 8265 CATTCACATGAAAGATCCCACCATGGGCAAGATCACCAGCATGCACTTTGCTGGCTGGAA 8324 Query 55888 GAAGGGACTCAAGACGGGTATGTACTA 55914 || ||||||||||| |||||||| Sbjct 8325 ACTAGGTCTCAAGACGGGCATGTACTA 8351 Score = 82.4 bits (90), Expect = 8e-11 Identities = 107/148 (72%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 55096 TGACTTTGACAAGCTTCACGAAGTGACGCGTGTTGTGACTCGGAACCTGAACCGGGTCAT 55155 ||||||| | ||||| |||||||| || | ||||| ||| ||||| ||||| |||| Sbjct 7521 TGACTTTAAAAAGCTACACGAAGTCACCCAAGTTGTTGTTCGCAACCTAAACCGCATCAT 7580 Query 55156 CGACAAGAATTACTACCCGACTGAAGCGGCGCGCAAGTCCAACCTCCGGCACCGGCCCAT 55215 ||| |||| ||||||| | | || | ||| |||| | || ||||| ||||| Sbjct 7581 CGATGTGAATCACTACCCTGTCCAGGAAGCTCACAACAGCAACATGCGCCACCGTCCCAT 7640 Query 55216 CGCCATCGGTGTACAGGGCTTGGCCGAC 55243 | |||||||||||||| |||| ||| Sbjct 7641 TGGTGTCGGTGTACAGGGCCTGGCTGAC 7668 >seq160 Length=132817 Score = 100 bits (110), Expect = 3e-16 Identities = 172/248 (69%), Gaps = 4/248 (2%) Strand=Plus/Plus Query 117326 GCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTC 117385 ||||||||| |||||||||||||||| |||||| | ||||| ||||||| ||| Sbjct 25449 GCAGCATCCGAACCACCAGCAAGACGCGAACCGAAGTTACCACTGGGCTCCAGACAGTTT 25508 Query 117386 AGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCC 117445 | |||||||| || ||||||| ||||||| | ||| || ||| ||| | Sbjct 25509 ATGTTGTTGGAACCGACAAAGTCCTGAGCCAGACCAATAATGGTTTGTTGTAGGGATACT 25568 Query 117446 TCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATG 117505 || || || || || | || || | | || | || ||||||| | | |||||||| Sbjct 25569 TCTCCGTGTTGGTAGGAGGTATGTCCAGAAACAAAACCAGCCAGCTCAACAACCTTCATA 25628 Query 117506 TC--TGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCA 117563 || ||| | ||| || ||| ||| || ||||| ||||| ||||||| ||||| | Sbjct 25629 TCCTGGAC--AATGTTTTTGCTGAAGCACGCGTAAATGACCTTCCGCTGACCAGGCTTAA 25686 Query 117564 GACCATCC 117571 |||||| Sbjct 25687 AGCCATCC 25694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547207702837400