Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20platani_20[genbank_20GCA_5F000978885.1_202015-04-23] 1,213 sequences; 29,181,415 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq411 257 2e-63 seq338 185 1e-41 seq145 145 9e-30 seq64 145 9e-30 seq160 82.4 9e-11 >seq411 Length=11963 Score = 257 bits (284), Expect = 2e-63 Identities = 1129/1759 (64%), Gaps = 67/1759 (4%) Strand=Plus/Minus Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091 ||| |||| || | |||||||||||||||||||| || |||||||| | |||| Sbjct 8366 GCCTGCGTACGTAAGTAGTACATGCCCGTCTTGAGACCTAGTTTCCAGCCAGCAAAGTGC 8307 Query 80092 ATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGA 80151 || ||| ||| | | ||||| | | |||| ||||| |||||||| || || Sbjct 8306 ATGCTGGTGATCTTGCCCATGGTGGGATCTTTCATGTGAATGTTTAGAGACTGCGATTGG 8247 Query 80152 CAGATGAAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCAT 80211 |||||||| |||||||| || ||||||| | || || || | ||| ||||| Sbjct 8246 TCAATGAAAGCACCACGATCAGCAGCCATTTGCACAACTGTACGCTGGGAAATCTCCCAA 8187 Query 80212 ACTGTACGATACAC--CTTACGAAGCTCCTCTGGAATG-TCCAGATTTT--GCACACTGC 80266 || || |||| ||| || || | |||||| | |||| || | | || Sbjct 8186 ACGGTCTTGTACAGAGCTTT--AATATCAGCAGGAATGCTAGAGATGTTCTGGATGGAGC 8129 Query 80267 CACCGTCCTTTACAATTTGATTTTTCAATT---CAGACGTCCAGACACCAAGCTTGTGCA 80323 || |||| | ||| |||| |||| | ||||| || | |||||| | | | Sbjct 8128 CATTGTCCGCAATAATGCGATTCTTCATGTTGTCAGAC---CATAAACCAAGATCGACTA 8072 Query 80324 GATCTTTCACAAG---GTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCA 80380 | || | ||| | | ||| | | || |||| || || || ||| ||| Sbjct 8071 GGTCACGTAGAAGCCAGGGGTTGACGACCTGGA---ACTCGCCAGCAAGAACGCGGCGCT 8015 Query 80381 GATACAGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGC 80440 | || | ||| | ||||| || || || ||| ||||| || | ||||| | ||||| Sbjct 8014 GGTAAATGTTGGATGTGTACGGTTCGAAGCACTCATTGTTGCCCAAAATCTGCGACGTGC 7955 Query 80441 TCGCCGTCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCT 80500 | || || ||||| || | || | || ||||| || | || |||| ||| || | || Sbjct 7954 TGGCTGTAGGCATGGGTGCAACTAGAAGAGAATTGCGTACACCATGCTGCTTAATCTTCT 7895 Query 80501 CGCGCAAATCTGACCAAAAATCAACCCCAA--CGCT----GTGAC--CCCACATGTCGTG 80552 | | | | ||| || || || | || || || ||||||| || Sbjct 7894 CCTTTAGAGAAGTCCAG---TC--CCACAGGTCACTAGGAGTCACATCCCACATATCAAA 7840 Query 80553 CTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTT 80612 |||||||||||| | || | ||||| ||| | | || ||| | |||||||||| Sbjct 7839 CTGCAAGATGCCTTGGGAGACAGGAGAACCCTCATAAGTTGAGTAAGTACCCTCCGTCTG 7780 Query 80613 GGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTT 80672 ||| | || || | | || || ||||| || ||| ||||| | |||||| Sbjct 7779 GGCGATTTCCATTGAAGCAGTTAGTGCGGCGTGGTAGATGGTTTCAAAAATCTGCTTGTT 7720 Query 80673 CACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAG 80732 | ||| || | ||| || || | || || | | ||| |||||||||| Sbjct 7719 GAGCTGGCGTGCTTCAGGGGATTCAAAAGGCATGCGGAGAGCAAGGAAAGCGTCAGCCAG 7660 Query 80733 GCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTT-CGATCGCTCGGCCTCCGGAA 80791 |||||| || |||| | || || ||||||||| |||| | | | | || ||| | | Sbjct 7659 GCCCTGTACACCGACACCAATGGGACGGTGGCGCATGTTGCTGTTG-TGAGCTTCCTGGA 7601 Query 80792 TTGGGTAAAAGTTATT---ATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAA 80848 ||||| || ||| |||||||| |||||| |||||||| |||||| | || | Sbjct 7600 CAGGGTA---GTGATTCACATCGATGATGCGGTTTAGGTTGCGAACAACAACTTGGGTGA 7544 Query 80849 CATCATGAAGTTTCTGAAAGTCGAATTG------GTTCCCCTTCACAAATGCCGGAAGGC 80902 | || || || || | |||||| | | ||| | ||| || | |||||| Sbjct 7543 CTTCGTGTAGCTTTTTAAAGTCATACTCACCCTTGTTGTAGTCCACGAAGGAAGGAAGGG 7484 Query 80903 TCAGGGACGCCAGATTGCACACGGCCACCTCTTCAG---CATCTGTAAACTCGACGATTT 80959 || || || || |||||||| || ||||| |||| || | ||| ||||| || | Sbjct 7483 CGAGAGATGCTAGGTTGCACACAGCGACCTCATCAGGGGCA-CAGTA--CTCGATAATCT 7427 Query 80960 CCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGC 81019 | ||||||| || ||| ||| ||||| || |||||||| || |||| ||||| Sbjct 7426 CAGTGCACAGGTTCGAACTGCGAATGGTACCTAGATTTTTCTGATTGCTCTTGCGGTTGC 7367 Query 81020 AAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGT 81079 | ||| |||||| ||| | ||| | || ||||| ||| | || || ||||| | Sbjct 7366 AGTGGTCTTTGTAGAGCATAAAAGGGTTGCCAGTCTCAGTCTGAGCCTCCAGAATGGCAT 7307 Query 81080 CCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGT 81139 ||| | | | |||||||| ||| |||| ||| || | | ||||| | | Sbjct 7306 ACCACAGTTTCTGGGCCTTGACAACCATGCGACCGCGGCCCTCCTTCTCGTACTTTTCAT 7247 Query 81140 AAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACA 81199 | | || |||| | || | || | | | | ||||| || || ||||||| Sbjct 7246 ACAGAGCCTCAAACTCTTCGCCATAGCAATCCGCCAAGCCGGGGCATTCATTGGGGCACA 7187 Query 81200 TCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGG 81259 | || |||||| | ||||| ||| ||||||||| ||| |||||| |||| Sbjct 7186 TGAGAGTCCAGTCCTCATTCTTCTCAACACGCTTCATGAACAAGTCGCAGATCCACAGGG 7127 Query 81260 CGGTGAACAGGTCGCG-GCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGA 81318 | ||| ||||| || ||| || | || || | || ||||| ||| || ||||| Sbjct 7126 CCAAGAATAGGTCACGAGCA-CGGACTTCTTCCTTTCCGTGGTTCTTGCGTAAGTCGAGG 7068 Query 81319 AAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCGACGG 81378 || || | || || |||||||||||||| ||||| | ||| | | || || | Sbjct 7067 AACTCGAAGACATCAGCATGCCATGGCTCGAGATAAATGGCAAAGGCTCCAGGTCGCTTG 7008 Query 81379 ---CCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATA 81435 |||||||||| || |||||||| || ||| || ||||| | ||| || | ||| Sbjct 7007 TTTCCACCCTGGTCAACATAACGGGCGGTGTTGTTGAAAACACGTAGCATGGGAACGATG 6948 Query 81436 CCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCG--CACCTTGCTGA 81493 || | || |||||| || || | || || || |||| || || || | Sbjct 6947 CCGTTCGAAGTACCGTTAGTGCCAGCAATGTAAGAGCCAGTGGCACGAATACGGTGAACA 6888 Query 81494 TTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCAT 81553 ||| |||||||| ||||| | | ||| |||||| ||||| || | ||| || | Sbjct 6887 TTG--AGACCGATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGT 6830 Query 81554 AAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGC 81613 |||| ||||||||||| || | |||||||| | | |||||| |||| |||| || Sbjct 6829 AAATGCCCTCGATGCTGTCATCCTTCATGTCGACTAGGAAACATGAAGACAACTGA--GC 6772 Query 81614 TTTTTGAG--CCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACAT 81671 | ||| |||||||| || || || || | |||||| |||| | | | ||||| Sbjct 6771 CTGGGGAGTACCGGCATTAAAGAGCGTAGGTGATGCGTGAGTGAAGAACTTGCTAGACAT 6712 Query 81672 CAGGTCATAGGTTTCCTTGACGCG-TGGAATATCGTCACCGTGAATACCGATAGCTACAC 81730 |||| |||||||| || || | || | | |||||| |||||| | ||| |||| Sbjct 6711 AAGGTTGTAGGTTTCAAGCACACGATCGACT-TTGTCACCCCAAATACCCACAGCAACAC 6653 Query 81731 GCATAAACATGTACTGGGG 81749 |||| | ||||| |||||| Sbjct 6652 GCATTATCATGTGCTGGGG 6634 >seq338 Length=64627 Score = 185 bits (204), Expect = 1e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| | || |||||||| ||||| || || || ||||| | Sbjct 52467 ATGCAAATCTTCGTCAAGACCTTGACGGGCAAGACCATTACCCTCGAAGTCGAGTCCTCT 52408 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| ||| | ||| | || || ||||| |||||||| || || || || ||| Sbjct 52407 GATACCATTGACAATGTCAAGTCCAAGATCCAGGATAAGGAGGGTATCCCCCCGGATCAG 52348 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| ||||||||||| ||||| |||||||||| |||||||| | ||||| || Sbjct 52347 CAGCGTCTCATTTTTGCTGGAAAGCAGCTCGAGGATGGCCGTACCCTTTCGGACTACAAC 52288 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || || ||||| |||||||| | || ||||||| || ||||| Sbjct 52287 ATTCAGAAAGAATCTACTCTTCACTTGGTTCTGCGTCTGCGTGGTGG 52241 Score = 172 bits (190), Expect = 6e-38 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| | || |||||||| ||||| || || || ||||| | Sbjct 52239 ATGCAAATCTTCGTCAAGACCTTGACGGGCAAGACCATTACCCTCGAAGTCGAGTCCTCT 52180 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| ||| | || | || || |||||||||||||| || ||||| || ||| Sbjct 52179 GATACCATTGACAATGTCAAATCCAAGATCCAGGACAAGGAGGGTATCCCTCCGGATCAG 52120 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || || || ||||| || ||||||| || ||||| | ||||| || Sbjct 52119 CAGCGTCTCATCTTCGCCGGAAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTACAAC 52060 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||| ||||| || |||||||| | || ||||||| || ||||| || Sbjct 52059 ATCCAGAAGGAGTCTACTCTTCACTTGGTTCTGCGTCTGCGTGGTGGCCA 52010 Score = 161 bits (178), Expect = 1e-34 Identities = 166/217 (76%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 27416 TTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTG 27475 |||||||||| |||||||| ||||| ||||| || || || ||||| || | ||||| Sbjct 52685 TTGTCAAGACCCTTACCGGAAAGACCATTACCCTCGAAGTCGAGTCCTCCGACACCATTG 52626 Query 27476 CAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAA 27535 || | ||| | || || |||||||||||||| || ||||| |||||||||||||| | Sbjct 52625 ACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCGGACCAGCAGCGTCTCA 52566 Query 27536 TTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGG 27595 | || || || ||||| || ||||||| || ||||| | ||||| || | || || | Sbjct 52565 TCTTCGCCGGAAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTACAACATTCAGAAAG 52506 Query 27596 AATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| |||||||| | ||| ||||||| || ||||| Sbjct 52505 AATCTACTCTTCACTTGGTCCTGCGTCTGCGTGGTGG 52469 Score = 145 bits (160), Expect = 9e-30 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 || |||||||| || || || ||||| ||||| |||| |||| || | ||| || Sbjct 52955 ACTGGCAAGACCATCACCCTCGAGGTGGAGTCTTCGGATACTATTGACAACGTTAAGTCT 52896 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || |||||||||||||| || ||||| |||||||||||||| || || ||||| ||| Sbjct 52895 AAGATCCAGGACAAGGAGGGTATCCCTCCGGACCAGCAGCGTCTCATCTTCGCTGGAAAG 52836 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || || ||||||| || ||||| | ||||| || | || ||||| || ||||| ||| Sbjct 52835 CAGCTTGAGGATGGCCGCACCCTGTCCGACTACAACATTCAGAAGGAGTCTACTCTCCAT 52776 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 ||||| | || || || ||||| Sbjct 52775 CTAGTGCTCCGCCTGCGTGGTGG 52753 >seq145 Length=91869 Score = 145 bits (160), Expect = 9e-30 Identities = 146/190 (77%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| ||||| || ||||| ||||| || ||||||||||| Sbjct 6209 ATGCAGATTTTCGTCAAGACCCTTACGGGTAAGACGATTACCCTCGAGGTTGAGTCCTCG 6150 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||| | || ||||||||||||||||| ||||| || |||||| Sbjct 6149 GACACCATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCGGACCAG 6090 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || ||||| ||||| || ||||||| || ||||| | ||||| || Sbjct 6089 CAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTGTCTGACTACAAC 6030 Query 27586 GTCCAAAAGG 27595 | || |||| Sbjct 6029 ATTCAGAAGG 6020 >seq64 Length=146407 Score = 145 bits (160), Expect = 9e-30 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474 || |||||||| || || || ||||| ||||| || ||||| ||||| || | || Sbjct 70747 TTCGTCAAGACCCTGACGGGTAAGACCATTACCCTGGAGGTCGAGTCTTCGGACACGATC 70806 Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534 | || | ||| | || || |||||||||||||| ||||| || ||||||||||| | Sbjct 70807 GACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCTTG 70866 Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594 || |||||||||||||| || ||||||| || || || | ||||| || |||| ||| Sbjct 70867 ATCTTTGCTGGTAAGCAGCTTGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAAG 70926 Query 27595 GAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || ||||| || || || ||| |||| || || ||||| Sbjct 70927 GAGTCCACCCTCCACCTTGTCCTGCGCCTGCGTGGTGG 70964 >seq160 Length=132817 Score = 82.4 bits (90), Expect = 9e-11 Identities = 168/247 (68%), Gaps = 2/247 (1%) Strand=Plus/Minus Query 31983 GGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAACCT-GT 32041 ||| ||| | |||||| ||||| ||||| || ||||| ||| ||| || ||| | || Sbjct 25694 GGATGGCTTTAAGCCTGGTCAGCGGAAGGTCATTTACGCGTGCTTCAGCAAAAACATTGT 25635 Query 32042 CGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACC 32101 | || || |||||||| | ||||| | || | || | | || || |||| || | Sbjct 25634 CCAG-GATATGAAGGTTGTTGAGCTGGCTGGTTTTGTTTCTGGACATACCTCCTACCAAC 25576 Query 32102 ACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAA 32161 |||| || | || || || |||||| | || |||||| ||||||||||| | | Sbjct 25575 ACGGAGAAGTATCCCTACAACAAACCATTATTGGTCTGGCTCAGGACTTTGTCGGTTCCA 25516 Query 32162 ATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGG 32221 | ||| | |||| || ||||| ||| | || || | || || || ||||| || Sbjct 25515 ACAACATAAACTGTCTGGAGCCCAGTGGTAACTTCGGTTCGCGTCTTGCTGGTGGTTCGG 25456 Query 32222 ATGCTGC 32228 ||||||| Sbjct 25455 ATGCTGC 25449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570301752668560