Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20platani_20[genbank_20GCA_5F000978885.1_202015-04-23]
1,213 sequences; 29,181,415 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq338 91.5 9e-14
seq64 84.2 1e-11
>seq338
Length=64627
Score = 91.5 bits (100), Expect = 9e-14
Identities = 153/219 (70%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||||| ||||| || ||||| |||||| || ||||| || || || || || ||
Sbjct 52022 AGACGCAGAACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGG 52081
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || ||||| || || ||||| || || | |||||| || ||||| || | ||||||
Sbjct 52082 CCATCCTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCCGGAGGGATACCCTCC 52141
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| |||| || | ||| || | ||| || || | ||| ||||| | |||
Sbjct 52142 TTGTCCTGGATC-TTGGATTTGACATTGTCAATGGTATCAGAGGACTCGACTTCGAGGGT 52200
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| || || || || || || || || || || |||||
Sbjct 52201 AATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 52239
Score = 91.5 bits (100), Expect = 9e-14
Identities = 147/209 (70%), Gaps = 2/209 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||||| ||||| || ||||| || || |||||||| || || || || || ||
Sbjct 52478 AGACGCAGGACCAAGTGAAGAGTAGATTCTTTCTGAATGTTGTAGTCGGAGAGGGTGCGG 52537
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || ||||| || || ||||| || || | |||||| |||||||| || | ||||||
Sbjct 52538 CCATCCTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCCTCC 52597
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| |||| || | || ||| | ||| ||||| | ||| ||||| | |||
Sbjct 52598 TTGTCCTGGATC-TTGGACTTGACGTTGTCAATGGTGTCGGAGGACTCGACTTCGAGGGT 52656
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAA 34696
|| || || ||||| | || || ||||
Sbjct 52657 AATGGTCTTTCCGGTAAGGGTCTTGACAA 52685
Score = 84.2 bits (92), Expect = 1e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
|| || | ||| | ||||||||| |||||| |||||||| || || || || || ||
Sbjct 52762 AGGCGGAGCACTAGATGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGG 52821
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || ||||| || || || || || || | |||||| |||||||| || | ||||||
Sbjct 52822 CCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCCTCC 52881
Query 34609 TTGTCTGTGATCTT 34622
||||| ||||||
Sbjct 52882 TTGTCCTGGATCTT 52895
>seq64
Length=146407
Score = 84.2 bits (92), Expect = 1e-11
Identities = 90/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563
||||| ||| |||||| || ||||| || || || || || || | || ||||| ||
Sbjct 70940 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCAAGCTGC 70881
Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622
||||| ||||| || || ||||| |||||||| || | ||||||||||| ||||||
Sbjct 70880 TTACCAGCAAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTT 70822
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314724947214629
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |