Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20platani_20[genbank_20GCA_5F000978885.1_202015-04-23]
1,213 sequences; 29,181,415 total letters
Query= NC_028853.1
Length=50078
Score E
Sequences producing significant alignments: (Bits) Value
seq1144 87.8 6e-13
>seq1144
Length=416
Score = 87.8 bits (96), Expect = 6e-13
Identities = 221/328 (67%), Gaps = 6/328 (2%)
Strand=Plus/Minus
Query 38694 GTTTTCCATCAAGTAAGGTTGCCATCGGTGTTCTGCCACAGCACATTTTTCCTTGATGTG 38753
||||| |||||| || ||| ||| || ||| | ||| | || |||||| |||||
Sbjct 377 GTTTTGAATCAAGGAAAGTTTGCATAGGAGTTTTTCCATAACAGTGCTTTCCTGAATGTG 318
Query 38754 TTCGATGGTGATTATAATACATTAA-CCACTCATCTAAATCCGCTTGTAATGTCGT-TAA 38811
||| || ||| || | ||||| ||| ||| | ||| ||| || || | ||
Sbjct 317 TTCTTTGAGTATTGTACTT-ATTAATCCATAAATCAACATCAATTTGCAAC-TCTTCTAC 260
Query 38812 ATCCGTATAAATTTTCTTCCTAAATGCCACTTGGTAAAATTCTTGTAAGATTGTTTTATG 38871
| | || ||| | || | ||| || | | |||||||||||| || ||| ||||
Sbjct 259 AGAGCTGTATATTCTTTTACGAAAAGCTATATCATAAAATTCTTGTTTCATAGTTCTATG 200
Query 38872 GAACCGTTCGCAGATACCATTCGTCTG-GGGATGCTTCACTTTCGTTTTCGTATGCTCTA 38930
||||| || || |||||||| || || ||| | | | || || ||||| ||||| ||||
Sbjct 199 GAACCTCTCACAAATACCATTGGTTTGTGGGCTACGT-ACCTTTGTTTTGGTATGATCTA 141
Query 38931 TGTCATTTATCGCTAAATAAAGCTCATAATCGTGATTTTCTACCTTGCCACAATATTCAC 38990
| | | || | ||||| | | ||| | || | |||| || || |||||||||
Sbjct 140 TATTTTCGATGCCCAAATACAATTGATATGCATGGTGTTCTGGTTTACCGCAATATTCAG 81
Query 38991 TTCCTCGGTCAGTTAATATGCGTAACAT 39018
| || |||||||| | ||| |||| |||
Sbjct 80 TACCACGGTCAGTCAGTATACGTAGCAT 53
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 160125693456240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |