Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20platani_20[genbank_20GCA_5F000978885.1_202015-04-23] 1,213 sequences; 29,181,415 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq17 82.4 7e-11 >seq17 Length=81907 Score = 82.4 bits (90), Expect = 7e-11 Identities = 190/280 (68%), Gaps = 6/280 (2%) Strand=Plus/Plus Query 34322 GGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAA-GCGGGGGT-TCC 34379 || || ||||||||||| | |||| || || || ||||| || || ||||| | | Sbjct 59086 GGTGTCAAGATCTGGGATGGCAACGGCTCGCGCGAGTTTCTTGATAACGCGGGTCTAGGC 59145 Query 34380 CATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGG 34439 || ||| || | ||||| | || || || ||||| || |||||| | || || |||| Sbjct 59146 CA--TCGTGAAGTTGGCGATCTAGGGCCTGTATACGGCTTTCAGTGGCGCCATTTCGGGG 59203 Query 34440 CGGAGTATCGGGGGAGCGAAG-CGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTAC 34498 | |||||| | || || ||| | |||||| |||| || || | || |||||| | Sbjct 59204 CCGAGTAT-GTGGATGCCAAGACAGACTATACGGGTCAAGGTGTTGATCAGCTGGCTGAA 59262 Query 34499 GTGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAAC 34558 || ||| ||| | ||| ||||| | || | | ||| | ||| ||| |||||| Sbjct 59263 GTCATCCACAAACTCAAGACCAACCCGTACGATCGGCGTATCATTATGACCGCTTGGAAC 59322 Query 34559 CCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACA 34598 || |||| | ||||||||| || |||||||||| Sbjct 59323 CCTGCGGATTTGAAGAAGATGGCGCTGCCACCGTGCCACA 59362 Score = 82.4 bits (90), Expect = 7e-11 Identities = 190/280 (68%), Gaps = 6/280 (2%) Strand=Plus/Minus Query 6747 TGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACGA 6806 |||||||||| || ||||||||| | |||| |||||||| ||| ||| | || Sbjct 59362 TGTGGCACGGTGGCAGCGCCATCTTCTTCAAATCCGCAGGGTTCCAAGCGGTCATAATGA 59303 Query 6807 TCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGCAGCTGGTCCGCTC 6866 | | | || | ||||| ||| | ||| ||| || | |||||| || | | Sbjct 59302 TACGCCGATCGTACGGGTTGGTCTTGAGTTTGTGGATGACTTCAGCCAGCTGATCAACAC 59243 Query 6867 CCTGTCCCGAATAGTCCG-CTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCACTGG 6925 | || |||| |||||| | ||| || || | |||||| ||||| || || | |||||| Sbjct 59242 CTTGACCCGTATAGTCTGTCTTGGCATCCAC-ATACTCGGCCCCGAAATGGCGCCACTGA 59184 Query 6926 AACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGA-ACCCCCGC-TTGTCCA 6983 || ||||| || || || | ||||| | || ||| ||| | ||||| || || | Sbjct 59183 AAGCCGTATACAGGCCCTAGATCGCCAACTTCACGA--TGGCCTAGACCCGCGTTATCAA 59126 Query 6984 GAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCC 7023 |||| || || || |||| | ||||||||||| || || Sbjct 59125 GAAACTCGCGCGAGCCGTTGCCATCCCAGATCTTGACACC 59086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448255603221360