Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20platani_20[genbank_20GCA_5F000978885.1_202015-04-23]
1,213 sequences; 29,181,415 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq17 82.4 7e-11
>seq17
Length=81907
Score = 82.4 bits (90), Expect = 7e-11
Identities = 190/280 (68%), Gaps = 6/280 (2%)
Strand=Plus/Plus
Query 34322 GGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAA-GCGGGGGT-TCC 34379
|| || ||||||||||| | |||| || || || ||||| || || ||||| | |
Sbjct 59086 GGTGTCAAGATCTGGGATGGCAACGGCTCGCGCGAGTTTCTTGATAACGCGGGTCTAGGC 59145
Query 34380 CATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGG 34439
|| ||| || | ||||| | || || || ||||| || |||||| | || || ||||
Sbjct 59146 CA--TCGTGAAGTTGGCGATCTAGGGCCTGTATACGGCTTTCAGTGGCGCCATTTCGGGG 59203
Query 34440 CGGAGTATCGGGGGAGCGAAG-CGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTAC 34498
| |||||| | || || ||| | |||||| |||| || || | || |||||| |
Sbjct 59204 CCGAGTAT-GTGGATGCCAAGACAGACTATACGGGTCAAGGTGTTGATCAGCTGGCTGAA 59262
Query 34499 GTGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAAC 34558
|| ||| ||| | ||| ||||| | || | | ||| | ||| ||| ||||||
Sbjct 59263 GTCATCCACAAACTCAAGACCAACCCGTACGATCGGCGTATCATTATGACCGCTTGGAAC 59322
Query 34559 CCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACA 34598
|| |||| | ||||||||| || ||||||||||
Sbjct 59323 CCTGCGGATTTGAAGAAGATGGCGCTGCCACCGTGCCACA 59362
Score = 82.4 bits (90), Expect = 7e-11
Identities = 190/280 (68%), Gaps = 6/280 (2%)
Strand=Plus/Minus
Query 6747 TGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACGA 6806
|||||||||| || ||||||||| | |||| |||||||| ||| ||| | ||
Sbjct 59362 TGTGGCACGGTGGCAGCGCCATCTTCTTCAAATCCGCAGGGTTCCAAGCGGTCATAATGA 59303
Query 6807 TCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGCAGCTGGTCCGCTC 6866
| | | || | ||||| ||| | ||| ||| || | |||||| || | |
Sbjct 59302 TACGCCGATCGTACGGGTTGGTCTTGAGTTTGTGGATGACTTCAGCCAGCTGATCAACAC 59243
Query 6867 CCTGTCCCGAATAGTCCG-CTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCACTGG 6925
| || |||| |||||| | ||| || || | |||||| ||||| || || | ||||||
Sbjct 59242 CTTGACCCGTATAGTCTGTCTTGGCATCCAC-ATACTCGGCCCCGAAATGGCGCCACTGA 59184
Query 6926 AACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGA-ACCCCCGC-TTGTCCA 6983
|| ||||| || || || | ||||| | || ||| ||| | ||||| || || |
Sbjct 59183 AAGCCGTATACAGGCCCTAGATCGCCAACTTCACGA--TGGCCTAGACCCGCGTTATCAA 59126
Query 6984 GAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCC 7023
|||| || || || |||| | ||||||||||| || ||
Sbjct 59125 GAAACTCGCGCGAGCCGTTGCCATCCCAGATCTTGACACC 59086
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448255603221360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |