Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20platani_20[genbank_20GCA_5F000978885.1_202015-04-23] 1,213 sequences; 29,181,415 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq145 156 1e-32 seq338 152 1e-31 seq64 145 2e-29 >seq145 Length=91869 Score = 156 bits (172), Expect = 1e-32 Identities = 149/191 (78%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || || ||||| || || | ||||| | ||||| |||||||||||||| |||||||| Sbjct 6022 TTCTGAATGTTGTAGTCAGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 6081 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 ||||| || ||||| || |||| || ||||||||||| ||||| || || || ||| Sbjct 6082 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCG 6141 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAAC 211106 |||||||| ||| ||||||||||| || |||||||| ||||| || ||||| || || Sbjct 6142 ATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGAAA 6201 Query 211107 ACCTGCATTTT 211117 | |||||| || Sbjct 6202 ATCTGCATCTT 6212 >seq338 Length=64627 Score = 152 bits (168), Expect = 1e-31 Identities = 155/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||||||||| || ||||| || ||||| || || | ||||| | ||||| Sbjct 52484 AGGACCAAGTGAAGAGTAGATTCTTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCC 52543 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || |||||||| || || || ||||| ||||| | || ||||||||| Sbjct 52544 TCAAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTGTCC 52603 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| || |||||||| ||| || || ||||| || || ||| Sbjct 52604 TGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAGGACTCGACTTCGAGGGTAATGGTC 52663 Query 211083 TTTCCCGTGAGAGTCTTTACAA 211104 ||||| || || ||||| |||| Sbjct 52664 TTTCCGGTAAGGGTCTTGACAA 52685 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||||||||| ||||| || |||||||| || || | ||||| | ||||| Sbjct 52028 AGAACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCC 52087 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || |||||||| || || || || || ||||| | || ||||||||| Sbjct 52088 TCAAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCCGGAGGGATACCCTCCTTGTCC 52147 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||| || || || ||||| |||||| || || ||||| || || ||| Sbjct 52148 TGGATCTTGGATTTGACATTGTCAATGGTATCAGAGGACTCGACTTCGAGGGTAATGGTC 52207 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| | ||||| || || | ||||| Sbjct 52208 TTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 52239 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||||||||| || ||||| || ||||| || |||| |||||| | ||||| Sbjct 52256 AGAACCAAGTGAAGAGTAGATTCTTTCTGAATGTTGTAGTCCGAAAGGGTACGGCCATCC 52315 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || || || || || || || || || || || | || ||||| ||| Sbjct 52316 TCGAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGATCCGGGGGGATACCCTCCTTATCC 52375 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || || ||||| |||||| || || ||||| || || ||| Sbjct 52376 TGGATCTTGGACTTGACATTGTCAATGGTATCAGAGGACTCGACTTCGAGGGTAATGGTC 52435 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| | ||||| || || | ||||| Sbjct 52436 TTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 52467 Score = 123 bits (136), Expect = 6e-23 Identities = 140/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || || ||||| ||||| || || ||||| || || | ||||| | ||||| Sbjct 52768 AGCACTAGATGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCC 52827 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || |||||||| || || || ||||| ||||| | || ||||||||| Sbjct 52828 TCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTGTCC 52887 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| || || || || || || |||||||| ||||| ||| Sbjct 52888 TGGATCTTAGACTTAACGTTGTCAATAGTATCCGAAGACTCCACCTCGAGGGTGATGGTC 52947 Query 211083 TTTCCCGT 211090 || || || Sbjct 52948 TTGCCAGT 52955 >seq64 Length=146407 Score = 145 bits (160), Expect = 2e-29 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||||||||| || |||||||| || |||||||| || || | || || | ||||| Sbjct 70949 AGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCC 70890 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || || ||||| | ||| || ||||| || |||| || ||||||||| Sbjct 70889 TCAAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 70830 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||| ||||| || || ||||| || || || ||| Sbjct 70829 TGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAAGACTCGACCTCCAGGGTAATGGTC 70770 Query 211083 TTTCCCGTGAGAGTCTTTACAAA 211105 || ||||| || ||||| || || Sbjct 70769 TTACCCGTCAGGGTCTTGACGAA 70747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159133984966745