Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20platani_20[genbank_20GCA_5F000978885.1_202015-04-23] 1,213 sequences; 29,181,415 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq64 136 9e-27 seq338 125 2e-23 seq145 113 1e-19 >seq64 Length=146407 Score = 136 bits (150), Expect = 9e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||||||||||||||| ||||| || || |||| ||||| |||| || ||| Sbjct 70959 ACGCAGGCGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGT 70900 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| ||||| ||||| | || || ||||| || ||||| || Sbjct 70899 GCGGCCATCCTCAAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCCGGGGGAATGCC 70840 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| ||| || ||||| ||||| || | || || || | Sbjct 70839 CTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAAGACTCGACCTCCAG 70780 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704 || || ||||| ||||||| || || | ||| Sbjct 70779 GGTAATGGTCTTACCCGTCAGGGTCTTGACGAA 70747 >seq338 Length=64627 Score = 125 bits (138), Expect = 2e-23 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || | ||| ||||| || || || |||| ||||| |||| | || Sbjct 52018 ACGCAGACGCAGAACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGT 52077 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| || |||||||| || || || || || || || ||||| Sbjct 52078 GCGGCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCCGGAGGGATACC 52137 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| || ||| || ||||| || |||| || || || | Sbjct 52138 CTCCTTGTCCTGGATCTTGGATTTGACATTGTCAATGGTATCAGAGGACTCGACTTCGAG 52197 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || |||||||||||||| || || | ||| | |||||| Sbjct 52198 GGTAATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 52239 Score = 122 bits (134), Expect = 2e-22 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || | ||| ||||| |||||||| || | ||||| || | | || Sbjct 52246 ACGCAGACGCAGAACCAAGTGAAGAGTAGATTCTTTCTGAATGTTGTAGTCCGAAAGGGT 52305 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| ||||| || || || || || || || || || ||||| Sbjct 52306 ACGGCCATCCTCGAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGATCCGGGGGGATACC 52365 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||| || |||||||| ||| ||| || ||||| || |||| || || || | Sbjct 52366 CTCCTTATCCTGGATCTTGGACTTGACATTGTCAATGGTATCAGAGGACTCGACTTCGAG 52425 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || |||||||||||||| || || | ||| | |||||| Sbjct 52426 GGTAATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 52467 Score = 118 bits (130), Expect = 3e-21 Identities = 140/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || || |||||||| || || || || | ||||| |||| || || | ||||| Sbjct 52768 AGCACTAGATGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCC 52827 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||||||||| || || || ||||| || || ||||| |||||||| Sbjct 52828 TCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTGTCC 52887 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || || || || || || | ||||| || | ||||| ||| Sbjct 52888 TGGATCTTAGACTTAACGTTGTCAATAGTATCCGAAGACTCCACCTCGAGGGTGATGGTC 52947 Query 225682 TTGCCCGTCA 225691 ||||| |||| Sbjct 52948 TTGCCAGTCA 52957 >seq145 Length=91869 Score = 113 bits (124), Expect = 1e-19 Identities = 134/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 225535 TTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGT 225594 ||||| || | || || | ||||| || |||||||| ||||||||||| || || || Sbjct 6031 TTGTAGTCAGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGC 6090 Query 225595 TGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCT 225654 ||||| || ||||| || |||||||| || ||||| ||| ||| ||||||||||| Sbjct 6091 TGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTGTCC 6150 Query 225655 GAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 |||| || || || | || |||||||| ||||| | || || | ||| | ||||| Sbjct 6151 GAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGAAAATCTGCATC 6210 Query 225715 TT 225716 || Sbjct 6211 TT 6212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192512666201822