Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20platani_20[genbank_20GCA_5F000978885.1_202015-04-23]
1,213 sequences; 29,181,415 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq64 183 6e-41
seq338 161 2e-34
seq145 152 1e-31
seq101 113 9e-20
seq160 86.0 1e-11
>seq64
Length=146407
Score = 183 bits (202), Expect = 6e-41
Identities = 172/219 (79%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||||||||| || || || || | ||| || || |||||||||||||| |
Sbjct 70965 ACCACCACGCAGGCGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 70906
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| |||||||||||||| || || || || ||||||||||| || || ||||| ||
Sbjct 70905 CAGAGTGCGGCCATCCTCAAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCCGGGGG 70846
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| ||||||||||| |||||||| | || ||| | ||||| |||||||||| |||||
Sbjct 70845 AATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAAGACTCGAC 70786
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090
|| || || || ||||||||||||| ||||| |||||
Sbjct 70785 CTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAA 70747
>seq338
Length=64627
Score = 161 bits (178), Expect = 2e-34
Identities = 172/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
||||||||||| || || |||| || | || || || |||||||||||||| |
Sbjct 52013 CCACCACGCAGACGCAGAACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAG 52072
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| |||||||||||||| || || || ||||| ||||| | ||| || || || ||
Sbjct 52073 AGGGTGCGGCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCCGGAGGG 52132
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|||||||||||||| |||||||| | ||| || | || || || || || | ||||||
Sbjct 52133 ATACCCTCCTTGTCCTGGATCTTGGATTTGACATTGTCAATGGTATCAGAGGACTCGACT 52192
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||||| || || ||||| |||||||| ||||| ||||| || |||||
Sbjct 52193 TCGAGGGTAATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 52239
Score = 154 bits (170), Expect = 3e-32
Identities = 171/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
|||||||||||| || || |||| || | || |||||| || ||||||||||| |
Sbjct 52240 ACCACCACGCAGACGCAGAACCAAGTGAAGAGTAGATTCTTTCTGAATGTTGTAGTCCGA 52299
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||| || ||||||||||| || || || || ||||| || | ||| || || || ||
Sbjct 52300 AAGGGTACGGCCATCCTCGAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGATCCGGGGG 52359
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||||||||||| || |||||||| | || || | || || || || || | |||||
Sbjct 52360 GATACCCTCCTTATCCTGGATCTTGGACTTGACATTGTCAATGGTATCAGAGGACTCGAC 52419
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|||||| || || ||||| |||||||| ||||| ||||| || |||||
Sbjct 52420 TTCGAGGGTAATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 52467
Score = 150 bits (166), Expect = 4e-31
Identities = 163/216 (75%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
|||||||||||| || || |||| || | || |||||| || ||||||||||| |
Sbjct 52468 ACCACCACGCAGACGCAGGACCAAGTGAAGAGTAGATTCTTTCTGAATGTTGTAGTCGGA 52527
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| |||||||||||||| || || || ||||| ||||| | ||| || ||||| ||
Sbjct 52528 GAGGGTGCGGCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAGG 52587
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|||||||||||||| |||||||| | || ||| | || || ||||| || | |||||
Sbjct 52588 GATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAGGACTCGAC 52647
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087
|||||| || || ||||| || || | ||||| ||
Sbjct 52648 TTCGAGGGTAATGGTCTTTCCGGTAAGGGTCTTGAC 52683
Score = 150 bits (166), Expect = 4e-31
Identities = 157/206 (76%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||||||||| || || ||||| | || || || || ||||||||||| |
Sbjct 52752 ACCACCACGCAGGCGGAGCACTAGATGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGA 52811
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| |||||||||||||| || || || || || ||||| | ||| || ||||| ||
Sbjct 52812 CAGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGG 52871
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|||||||||||||| |||||||| | || ||| | || ||||| ||||||| || ||
Sbjct 52872 GATACCCTCCTTGTCCTGGATCTTAGACTTAACGTTGTCAATAGTATCCGAAGACTCCAC 52931
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCA 283077
||||| ||||| ||||| || ||||
Sbjct 52932 CTCGAGGGTGATGGTCTTGCCAGTCA 52957
>seq145
Length=91869
Score = 152 bits (168), Expect = 1e-31
Identities = 153/199 (77%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971
|| || ||||||||||||| || |||||||||||||| || || || || || ||||||
Sbjct 6022 TTCTGAATGTTGTAGTCAGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 6081
Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031
| || || ||||| ||||| ||||||||||| || ||||| | || || | |||
Sbjct 6082 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCG 6141
Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAAT 283091
|| |||||||| | || || ||||| || |||||||||||||| | ||||| |||||
Sbjct 6142 ATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGAAA 6201
Query 283092 ATCTGCATTTTCATATACA 283110
|||||||| || | ||||
Sbjct 6202 ATCTGCATCTTGACCTACA 6220
>seq101
Length=72697
Score = 113 bits (124), Expect = 9e-20
Identities = 179/257 (70%), Gaps = 0/257 (0%)
Strand=Plus/Minus
Query 230154 GTGAAACAAATCGTCACAGAAGTAGTTGCAAATGAAAAGGAGTTCATTTGCGACGCTATT 230213
||| || | ||| |||| || | || | | || ||||||||| | ||| ||| |
Sbjct 40955 GTGCAAAAGATCATCACTGATGCCGTCGTGATCGAGAAGGAGTTCCTGACCGAGGCTCTG 40896
Query 230214 CCTTGCCGTCTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCT 230273
|| ||| |||| | || ||||| || ||||| ||| ||| || || || || || |||
Sbjct 40895 CCCTGCGGTCTGCTAGGAATGAACGCCGATCTGATGAAGCAGTACATTGAGTTTGTTGCT 40836
Query 230274 GATCGTATTTTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCT 230333
|| || | | || || ||||| ||||||| ||||| ||| ||||| ||||
Sbjct 40835 GACCGCCTACTTGTTGCTCTAGGCAACGAGAAGGTGTACCGTGCCACAAACCCATTCGAC 40776
Query 230334 TTTATGGAGCTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGAT 230393
|| |||||| ||| || ||| || || ||||||||||| || ||||||||| ||||
Sbjct 40775 TTCATGGAGAACATCTCGCTCGGCGGCAAGACTAACTTCTTTGAGAAGCGTGTCGGCGAC 40716
Query 230394 TATCAAAGGCCCGGTGT 230410
|| || | | | |||||
Sbjct 40715 TACCAGAAGGCTGGTGT 40699
>seq160
Length=132817
Score = 86.0 bits (94), Expect = 1e-11
Identities = 206/306 (67%), Gaps = 8/306 (3%)
Strand=Plus/Plus
Query 274494 TGGAAAAAGTTCATGACAAGACC--TGATATGTGAGTTCCGTCAACGTCGGCATCTGTCA 274551
|||| ||||| || | ||| || ||||||||||| || ||| || ||| | ||
Sbjct 26166 TGGAGGAAGTTGATCAAAAGTCCCTTGATATGTGAG--CCATCATGATCCTGATCAGCCA 26223
Query 274552 TGATCATAACATGTCCATACCGAAGCGAGGAAGTATCTTTATACAACTTCCCTGT--TTG 274609
||||||| | ||| ||||| ||||| ||||| |||| | || || ||| ||
Sbjct 26224 TGATCATGAGATGGCCATAACGAAGACTCTTGGTATCAGTATATA-CTGCCTTGTGCTTC 26282
Query 274610 AAGCCCAAGAATTTGCTTGAGAGCGGTGATTTCTTCGTTCTTTGTGATACTCGCCACAGA 274669
| ||||| || | |||||| | ||| || | |||||| ||||| ||| ||
Sbjct 26283 AGGCCCATAAACT-GCTTGATATTCTGGATCTCCTGGTTCTTGGTGATTTGGTCCAGCGA 26341
Query 274670 AGCATCACGTACGTTCAGCAACTTACCGCGGAGAGGGAAAACGCCATACCTTTCGCGCCC 274729
|||||||| || || |||| |||||| ||||||||||| || || | ||| | |
Sbjct 26342 TGCATCACGGACATTGAGCATCTTACCACGGAGAGGGAACACACCGATGCGGTCGGGGTC 26401
Query 274730 GATGACCGAAAGACCGGCGATCGCGAGAGTTGCTGCTGAATCTCCCTCTGTGAGAATCAA 274789
|| | || | | || || | || | | | ||||| || ||||| || ||||||||
Sbjct 26402 GAGAATCGCACGGCCTGCAACAGCCAAACTCTTGGCTGAGTCACCCTCAGTCAGAATCAA 26461
Query 274790 AGTACA 274795
||| ||
Sbjct 26462 AGTGCA 26467
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046722932037302
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