Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20platani_20[genbank_20GCA_5F000978885.1_202015-04-23] 1,213 sequences; 29,181,415 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq64 183 6e-41 seq338 161 2e-34 seq145 152 1e-31 seq101 113 9e-20 seq160 86.0 1e-11 >seq64 Length=146407 Score = 183 bits (202), Expect = 6e-41 Identities = 172/219 (79%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||||||||| || || || || | ||| || || |||||||||||||| | Sbjct 70965 ACCACCACGCAGGCGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 70906 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||||||||| || || || || ||||||||||| || || ||||| || Sbjct 70905 CAGAGTGCGGCCATCCTCAAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCCGGGGG 70846 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| |||||||| | || ||| | ||||| |||||||||| ||||| Sbjct 70845 AATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAAGACTCGAC 70786 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || || || || ||||||||||||| ||||| ||||| Sbjct 70785 CTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAA 70747 >seq338 Length=64627 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||| || || |||| || | || || || |||||||||||||| | Sbjct 52013 CCACCACGCAGACGCAGAACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAG 52072 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||||||||| || || || ||||| ||||| | ||| || || || || Sbjct 52073 AGGGTGCGGCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCCGGAGGG 52132 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 |||||||||||||| |||||||| | ||| || | || || || || || | |||||| Sbjct 52133 ATACCCTCCTTGTCCTGGATCTTGGATTTGACATTGTCAATGGTATCAGAGGACTCGACT 52192 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| || || ||||| |||||||| ||||| ||||| || ||||| Sbjct 52193 TCGAGGGTAATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 52239 Score = 154 bits (170), Expect = 3e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| || || |||| || | || |||||| || ||||||||||| | Sbjct 52240 ACCACCACGCAGACGCAGAACCAAGTGAAGAGTAGATTCTTTCTGAATGTTGTAGTCCGA 52299 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || ||||||||||| || || || || ||||| || | ||| || || || || Sbjct 52300 AAGGGTACGGCCATCCTCGAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGATCCGGGGG 52359 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||||| || |||||||| | || || | || || || || || | ||||| Sbjct 52360 GATACCCTCCTTATCCTGGATCTTGGACTTGACATTGTCAATGGTATCAGAGGACTCGAC 52419 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||||| || || ||||| |||||||| ||||| ||||| || ||||| Sbjct 52420 TTCGAGGGTAATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 52467 Score = 150 bits (166), Expect = 4e-31 Identities = 163/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| || || |||| || | || |||||| || ||||||||||| | Sbjct 52468 ACCACCACGCAGACGCAGGACCAAGTGAAGAGTAGATTCTTTCTGAATGTTGTAGTCGGA 52527 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||||||||| || || || ||||| ||||| | ||| || ||||| || Sbjct 52528 GAGGGTGCGGCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAGG 52587 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||||| |||||||| | || ||| | || || ||||| || | ||||| Sbjct 52588 GATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAGGACTCGAC 52647 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 |||||| || || ||||| || || | ||||| || Sbjct 52648 TTCGAGGGTAATGGTCTTTCCGGTAAGGGTCTTGAC 52683 Score = 150 bits (166), Expect = 4e-31 Identities = 157/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||||||||| || || ||||| | || || || || ||||||||||| | Sbjct 52752 ACCACCACGCAGGCGGAGCACTAGATGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGA 52811 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||||||||| || || || || || ||||| | ||| || ||||| || Sbjct 52812 CAGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGG 52871 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||||| |||||||| | || ||| | || ||||| ||||||| || || Sbjct 52872 GATACCCTCCTTGTCCTGGATCTTAGACTTAACGTTGTCAATAGTATCCGAAGACTCCAC 52931 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCA 283077 ||||| ||||| ||||| || |||| Sbjct 52932 CTCGAGGGTGATGGTCTTGCCAGTCA 52957 >seq145 Length=91869 Score = 152 bits (168), Expect = 1e-31 Identities = 153/199 (77%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || || ||||||||||||| || |||||||||||||| || || || || || |||||| Sbjct 6022 TTCTGAATGTTGTAGTCAGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 6081 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 | || || ||||| ||||| ||||||||||| || ||||| | || || | ||| Sbjct 6082 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCG 6141 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAAT 283091 || |||||||| | || || ||||| || |||||||||||||| | ||||| ||||| Sbjct 6142 ATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGAAA 6201 Query 283092 ATCTGCATTTTCATATACA 283110 |||||||| || | |||| Sbjct 6202 ATCTGCATCTTGACCTACA 6220 >seq101 Length=72697 Score = 113 bits (124), Expect = 9e-20 Identities = 179/257 (70%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 230154 GTGAAACAAATCGTCACAGAAGTAGTTGCAAATGAAAAGGAGTTCATTTGCGACGCTATT 230213 ||| || | ||| |||| || | || | | || ||||||||| | ||| ||| | Sbjct 40955 GTGCAAAAGATCATCACTGATGCCGTCGTGATCGAGAAGGAGTTCCTGACCGAGGCTCTG 40896 Query 230214 CCTTGCCGTCTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCT 230273 || ||| |||| | || ||||| || ||||| ||| ||| || || || || || ||| Sbjct 40895 CCCTGCGGTCTGCTAGGAATGAACGCCGATCTGATGAAGCAGTACATTGAGTTTGTTGCT 40836 Query 230274 GATCGTATTTTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCT 230333 || || | | || || ||||| ||||||| ||||| ||| ||||| |||| Sbjct 40835 GACCGCCTACTTGTTGCTCTAGGCAACGAGAAGGTGTACCGTGCCACAAACCCATTCGAC 40776 Query 230334 TTTATGGAGCTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGAT 230393 || |||||| ||| || ||| || || ||||||||||| || ||||||||| |||| Sbjct 40775 TTCATGGAGAACATCTCGCTCGGCGGCAAGACTAACTTCTTTGAGAAGCGTGTCGGCGAC 40716 Query 230394 TATCAAAGGCCCGGTGT 230410 || || | | | ||||| Sbjct 40715 TACCAGAAGGCTGGTGT 40699 >seq160 Length=132817 Score = 86.0 bits (94), Expect = 1e-11 Identities = 206/306 (67%), Gaps = 8/306 (3%) Strand=Plus/Plus Query 274494 TGGAAAAAGTTCATGACAAGACC--TGATATGTGAGTTCCGTCAACGTCGGCATCTGTCA 274551 |||| ||||| || | ||| || ||||||||||| || ||| || ||| | || Sbjct 26166 TGGAGGAAGTTGATCAAAAGTCCCTTGATATGTGAG--CCATCATGATCCTGATCAGCCA 26223 Query 274552 TGATCATAACATGTCCATACCGAAGCGAGGAAGTATCTTTATACAACTTCCCTGT--TTG 274609 ||||||| | ||| ||||| ||||| ||||| |||| | || || ||| || Sbjct 26224 TGATCATGAGATGGCCATAACGAAGACTCTTGGTATCAGTATATA-CTGCCTTGTGCTTC 26282 Query 274610 AAGCCCAAGAATTTGCTTGAGAGCGGTGATTTCTTCGTTCTTTGTGATACTCGCCACAGA 274669 | ||||| || | |||||| | ||| || | |||||| ||||| ||| || Sbjct 26283 AGGCCCATAAACT-GCTTGATATTCTGGATCTCCTGGTTCTTGGTGATTTGGTCCAGCGA 26341 Query 274670 AGCATCACGTACGTTCAGCAACTTACCGCGGAGAGGGAAAACGCCATACCTTTCGCGCCC 274729 |||||||| || || |||| |||||| ||||||||||| || || | ||| | | Sbjct 26342 TGCATCACGGACATTGAGCATCTTACCACGGAGAGGGAACACACCGATGCGGTCGGGGTC 26401 Query 274730 GATGACCGAAAGACCGGCGATCGCGAGAGTTGCTGCTGAATCTCCCTCTGTGAGAATCAA 274789 || | || | | || || | || | | | ||||| || ||||| || |||||||| Sbjct 26402 GAGAATCGCACGGCCTGCAACAGCCAAACTCTTGGCTGAGTCACCCTCAGTCAGAATCAA 26461 Query 274790 AGTACA 274795 ||| || Sbjct 26462 AGTGCA 26467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046722932037302