Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20platani_20[genbank_20GCA_5F000978885.1_202015-04-23]
1,213 sequences; 29,181,415 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq338 138 8e-28
seq64 120 2e-22
seq145 111 1e-19
>seq338
Length=64627
Score = 138 bits (152), Expect = 8e-28
Identities = 169/229 (74%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170
|| || | ||| | || |||| |||||| || |||||| ||||||||||| |||| |
Sbjct 52013 CCACCACGCAGACGCAGAACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAG 52072
Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230
|| ||| | || || |||||||| ||||| ||||| | |||||||||||| | |||
Sbjct 52073 AGGGTGCGGCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCCGGAGGG 52132
Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCA 44288
| ||| ||||| ||| ||||| || || ||| | ||||| || | ||| || |
Sbjct 52133 ATACCCTCCTTGTCCTGGATCTTGGATTTGACATTGT--CAATGGTATCAGAGGACTCGA 52190
Query 44289 CCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
| || | ||||| ||||| ||||| | |||||| ||||||||||||||
Sbjct 52191 CTTCGAGGGTAATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 52239
Score = 109 bits (120), Expect = 4e-19
Identities = 167/236 (71%), Gaps = 4/236 (2%)
Strand=Plus/Plus
Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163
|| ||| || || | ||| | || |||| |||||| || || || || ||||||||
Sbjct 52234 TTGCATACCACCACGCAGACGCAGAACCAAGTGAAGAGTAGATTCTTTCTGAATGTTGTA 52293
Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223
|| | || || | || || |||||||| || ||||| || | ||||||||||||
Sbjct 52294 GTCCGAAAGGGTACGGCCATCCTCGAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGATC 52353
Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCG 44281
| || | ||| ||||| ||| ||||| ||| || ||| | ||||| || | |
Sbjct 52354 CGGGGGGATACCCTCCTTATCCTGGATCTTGGACTTGACATTGT--CAATGGTATCAGAG 52411
Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| || || || | ||||| ||||| ||||| | |||||| ||||||||||||||
Sbjct 52412 GACTCGACTTCGAGGGTAATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 52467
>seq64
Length=146407
Score = 120 bits (132), Expect = 2e-22
Identities = 159/221 (72%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 44108 ATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCG 44167
|| || || | ||| | || || ||||| || ||| |||||| ||||||||||| |||
Sbjct 70967 ATACCACCACGCAGGCGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 70908
Query 44168 GCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAA 44227
| || ||| | || || |||||||| || ||||||||||| |||||||| || |
Sbjct 70907 GACAGAGTGCGGCCATCCTCAAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCCGGG 70848
Query 44228 GGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCC 44287
|| | || ||||| ||| ||||| ||| | | | || ||||| | || ||
Sbjct 70847 GGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAAGACTCG 70788
Query 44288 ACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAA 44328
||||||| ||||| ||||| ||||| |||||||| |||||
Sbjct 70787 ACCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAA 70747
>seq145
Length=91869
Score = 111 bits (122), Expect = 1e-19
Identities = 141/192 (73%), Gaps = 4/192 (2%)
Strand=Plus/Plus
Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207
|||| || |||||||| || | || ||| | || ||||||||||| || || ||||
Sbjct 6020 CCTTCTGAATGTTGTAGTCAGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGA 6079
Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265
||| |||||||| || | || | || ||||| ||| ||||| ||| || |||
Sbjct 6080 TCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGT 6139
Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325
| |||||||| | ||| || ||||| | ||||||||||| ||||| |||||||| ||
Sbjct 6140 --CGATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGAC 6197
Query 44326 GAAGATTTGCAT 44337
||| || |||||
Sbjct 6198 GAAAATCTGCAT 6209
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359985078104421
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |