Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20platani_20[genbank_20GCA_5F000978885.1_202015-04-23]
1,213 sequences; 29,181,415 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq338 147 5e-30
seq145 132 1e-25
seq64 123 6e-23
>seq338
Length=64627
Score = 147 bits (162), Expect = 5e-30
Identities = 151/196 (77%), Gaps = 1/196 (1%)
Strand=Plus/Minus
Query 177933 GTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAG 177992
|| || || || || ||||| || || |||||||| || || ||| |||||||| ||
Sbjct 52683 GTCAAGACCCTTACCGGAAAGACCATTACCCTCGAAGTCGAGTCCTCCGACACCATTGAC 52624
Query 177993 AACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATC 178052
|||||||| ||||| |||||||| || || ||||||||||||||||| || || |||
Sbjct 52623 AACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCGGACCAGCAGCGTCTCATC 52564
Query 178053 TTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAA 178112
||||||||||| ||||| || ||||| | || || |||| || ||| | || ||||||
Sbjct 52563 TTCGCCGGAAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTACAACATTCAGAAAGAA 52504
Query 178113 TCAACACTGCATCTTG 178128
|| || || || ||||
Sbjct 52503 TCTACTCTTCA-CTTG 52489
Score = 138 bits (152), Expect = 3e-27
Identities = 156/208 (75%), Gaps = 1/208 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| ||||| || || | || || || || || |||||||| || || ||| ||
Sbjct 52236 CAAATCTTCGTCAAGACCTTGACGGGCAAGACCATTACCCTCGAAGTCGAGTCCTCTGAT 52177
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| || || |||||| ||||| |||||||| || || ||||||||||| |||||
Sbjct 52176 ACCATTGACAATGTCAAATCCAAGATCCAGGACAAGGAGGGTATCCCTCCGGATCAGCAG 52117
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || |||||||||||||| ||||| || ||||| | || || |||| || ||| ||
Sbjct 52116 CGTCTCATCTTCGCCGGAAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTACAACATC 52057
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131
|| || || || || || || |||| ||
Sbjct 52056 CAGAAGGAGTCTACTCTTCA-CTTGGTT 52030
Score = 127 bits (140), Expect = 5e-24
Identities = 139/185 (75%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004
|| || || || ||||||||||||||||| || || || || || ||||| ||
Sbjct 52955 ACTGGCAAGACCATCACCCTCGAGGTGGAGTCTTCGGATACTATTGACAACGTTAAGTCT 52896
Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064
||||| |||||||| || || ||||||||||||||||| || || |||||||| |||||
Sbjct 52895 AAGATCCAGGACAAGGAGGGTATCCCTCCGGACCAGCAGCGTCTCATCTTCGCTGGAAAG 52836
Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124
||||| || ||||| | || || |||| || ||| | || || || || || || |||
Sbjct 52835 CAGCTTGAGGATGGCCGCACCCTGTCCGACTACAACATTCAGAAGGAGTCTACTCTCCAT 52776
Query 178125 CTTGT 178129
|| ||
Sbjct 52775 CTAGT 52771
>seq145
Length=91869
Score = 132 bits (146), Expect = 1e-25
Identities = 131/169 (78%), Gaps = 3/169 (2%)
Strand=Plus/Minus
Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969
|||| || |||| | |||||||| || || || || || || ||||| ||||||||||
Sbjct 6217 AGGTCAAGATGC---AGATTTTCGTCAAGACCCTTACGGGTAAGACGATTACCCTCGAGG 6161
Query 177970 TGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCC 178029
| || ||| ||||||||||| || ||||| |||||||||||||| || || || |
Sbjct 6160 TTGAGTCCTCGGACACCATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTC 6101
Query 178030 CTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGG 178078
| ||||||||||| || || |||||||| || || ||||| || |||||
Sbjct 6100 CCCCGGACCAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGATGG 6052
>seq64
Length=146407
Score = 123 bits (136), Expect = 6e-23
Identities = 148/201 (74%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988
|||||| || || || || || || || || ||||| ||||| || || ||||| ||
Sbjct 70746 TTTCGTCAAGACCCTGACGGGTAAGACCATTACCCTGGAGGTCGAGTCTTCGGACACGAT 70805
Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048
||| |||||||| ||||| |||||||| || || || || ||||||||||| || |
Sbjct 70806 CGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCTT 70865
Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108
||||| || || || ||||| || ||||| | ||||| |||| || ||| |||| ||
Sbjct 70866 GATCTTTGCTGGTAAGCAGCTTGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAA 70925
Query 178109 AGAATCAACACTGCATCTTGT 178129
|| || || || || |||||
Sbjct 70926 GGAGTCCACCCTCCACCTTGT 70946
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203712492136322
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |