Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20platani_20[genbank_20GCA_5F000978885.1_202015-04-23] 1,213 sequences; 29,181,415 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq338 147 5e-30 seq145 132 1e-25 seq64 123 6e-23 >seq338 Length=64627 Score = 147 bits (162), Expect = 5e-30 Identities = 151/196 (77%), Gaps = 1/196 (1%) Strand=Plus/Minus Query 177933 GTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAG 177992 || || || || || ||||| || || |||||||| || || ||| |||||||| || Sbjct 52683 GTCAAGACCCTTACCGGAAAGACCATTACCCTCGAAGTCGAGTCCTCCGACACCATTGAC 52624 Query 177993 AACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATC 178052 |||||||| ||||| |||||||| || || ||||||||||||||||| || || ||| Sbjct 52623 AACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCGGACCAGCAGCGTCTCATC 52564 Query 178053 TTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAA 178112 ||||||||||| ||||| || ||||| | || || |||| || ||| | || |||||| Sbjct 52563 TTCGCCGGAAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTACAACATTCAGAAAGAA 52504 Query 178113 TCAACACTGCATCTTG 178128 || || || || |||| Sbjct 52503 TCTACTCTTCA-CTTG 52489 Score = 138 bits (152), Expect = 3e-27 Identities = 156/208 (75%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || | || || || || || |||||||| || || ||| || Sbjct 52236 CAAATCTTCGTCAAGACCTTGACGGGCAAGACCATTACCCTCGAAGTCGAGTCCTCTGAT 52177 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || |||||| ||||| |||||||| || || ||||||||||| ||||| Sbjct 52176 ACCATTGACAATGTCAAATCCAAGATCCAGGACAAGGAGGGTATCCCTCCGGATCAGCAG 52117 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||||||||| ||||| || ||||| | || || |||| || ||| || Sbjct 52116 CGTCTCATCTTCGCCGGAAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTACAACATC 52057 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 || || || || || || || |||| || Sbjct 52056 CAGAAGGAGTCTACTCTTCA-CTTGGTT 52030 Score = 127 bits (140), Expect = 5e-24 Identities = 139/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 || || || || ||||||||||||||||| || || || || || ||||| || Sbjct 52955 ACTGGCAAGACCATCACCCTCGAGGTGGAGTCTTCGGATACTATTGACAACGTTAAGTCT 52896 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| |||||||| || || ||||||||||||||||| || || |||||||| ||||| Sbjct 52895 AAGATCCAGGACAAGGAGGGTATCCCTCCGGACCAGCAGCGTCTCATCTTCGCTGGAAAG 52836 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 ||||| || ||||| | || || |||| || ||| | || || || || || || ||| Sbjct 52835 CAGCTTGAGGATGGCCGCACCCTGTCCGACTACAACATTCAGAAGGAGTCTACTCTCCAT 52776 Query 178125 CTTGT 178129 || || Sbjct 52775 CTAGT 52771 >seq145 Length=91869 Score = 132 bits (146), Expect = 1e-25 Identities = 131/169 (78%), Gaps = 3/169 (2%) Strand=Plus/Minus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| || |||| | |||||||| || || || || || || ||||| |||||||||| Sbjct 6217 AGGTCAAGATGC---AGATTTTCGTCAAGACCCTTACGGGTAAGACGATTACCCTCGAGG 6161 Query 177970 TGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCC 178029 | || ||| ||||||||||| || ||||| |||||||||||||| || || || | Sbjct 6160 TTGAGTCCTCGGACACCATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTC 6101 Query 178030 CTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGG 178078 | ||||||||||| || || |||||||| || || ||||| || ||||| Sbjct 6100 CCCCGGACCAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGATGG 6052 >seq64 Length=146407 Score = 123 bits (136), Expect = 6e-23 Identities = 148/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988 |||||| || || || || || || || || ||||| ||||| || || ||||| || Sbjct 70746 TTTCGTCAAGACCCTGACGGGTAAGACCATTACCCTGGAGGTCGAGTCTTCGGACACGAT 70805 Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048 ||| |||||||| ||||| |||||||| || || || || ||||||||||| || | Sbjct 70806 CGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCTT 70865 Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 ||||| || || || ||||| || ||||| | ||||| |||| || ||| |||| || Sbjct 70866 GATCTTTGCTGGTAAGCAGCTTGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAA 70925 Query 178109 AGAATCAACACTGCATCTTGT 178129 || || || || || ||||| Sbjct 70926 GGAGTCCACCCTCCACCTTGT 70946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203712492136322