Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20platani_20[genbank_20GCA_5F000978885.1_202015-04-23]
1,213 sequences; 29,181,415 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq145 152 5e-32
seq64 132 4e-26
seq338 113 4e-20
>seq145
Length=91869
Score = 152 bits (168), Expect = 5e-32
Identities = 154/196 (79%), Gaps = 6/196 (3%)
Strand=Plus/Plus
Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732
||||||||||||| ||||| || |||||||| | || || ||||||||||| ||||| |
Sbjct 6020 CCTTCTGAATGTTGTAGTCAGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGA 6079
Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTG-CTT--CAACG 41789
|||||||||| ||||||| ||||| || |||||||||| ||| | || | ||| || |
Sbjct 6080 TCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC-TGAATCTTGGACTTGACATTG 6138
Query 41790 ACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTA 41849
|| | ||||| ||||| ||||| | || ||||| |||||||| || ||||| |
Sbjct 6139 TCG--ATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGA 6196
Query 41850 CGAAAATCTGCATGTT 41865
||||||||||||| ||
Sbjct 6197 CGAAAATCTGCATCTT 6212
>seq64
Length=146407
Score = 132 bits (146), Expect = 4e-26
Identities = 163/220 (74%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | || || || || ||| ||||||||| ||||| ||||||||
Sbjct 70964 CCACCACGCAGGCGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 70905
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| ||||| | || || |||||||| || || || |||| |||||| ||||||| ||||
Sbjct 70904 AGAGTGCGGCCATCCTCAAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCCGGGGGA 70845
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| || |||||||||| ||| || ||| | || | | | ||||| ||||| ||
Sbjct 70844 ATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTGTCGATCGTGTCCGAAGACTCGAC 70786
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAA 41854
||||| || || || ||||||||||| ||||| ||||||
Sbjct 70785 CTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAAA 70746
>seq338
Length=64627
Score = 113 bits (124), Expect = 4e-20
Identities = 150/206 (73%), Gaps = 2/206 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | ||| ||||| || || ||||||||||||||| ||||||||
Sbjct 52753 CCACCACGCAGGCGGAGCACTAGATGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGAC 52812
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| | || || |||||||| || ||||| || || ||||| ||||||| ||
Sbjct 52813 AGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGG 52872
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| | |||||||||| ||| || ||| |||| | | | ||| || ||||||||
Sbjct 52873 ATACCCTCCTTGTCCTGGATCTTAGACTT-AACGTTGTCAATAGTATCCGAAGACTCCAC 52931
Query 41815 CTCCACCGTTATCGTTTTACCCGTCA 41840
||| | || || || || || ||||
Sbjct 52932 CTCGAGGGTGATGGTCTTGCCAGTCA 52957
Score = 109 bits (120), Expect = 5e-19
Identities = 163/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| || || ||||| | |||| || || || ||||||||| ||||| ||||||||
Sbjct 52012 GCCACCACGCAGACGCAGAACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGA 52071
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
||||||||| | || || |||||||| |||||||| || || ||||| || |||| ||
Sbjct 52072 GAGGGTGCGGCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCCGGAGG 52131
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813
| | |||||||||| || | || | || || | | | || || ||||| |
Sbjct 52132 GATACCCTCCTTGTCC-TGGATCTTGGATTTGACATTGTCAATGGTATCAGAGGACTCGA 52190
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
| || | || || || || ||||||| ||||| ||||| || |||||
Sbjct 52191 CTTCGAGGGTAATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 52239
Score = 104 bits (114), Expect = 2e-17
Identities = 154/216 (71%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | |||| || || || || ||||||||||| |||||||||
Sbjct 52469 CCACCACGCAGACGCAGGACCAAGTGAAGAGTAGATTCTTTCTGAATGTTGTAGTCGGAG 52528
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| | || || |||||||| |||||||| || || ||||| ||||||| ||
Sbjct 52529 AGGGTGCGGCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAGGG 52588
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| | |||||||||| ||| || ||| ||| | | | |||||| ||||| ||
Sbjct 52589 ATACCCTCCTTGTCCTGGATCTTGGACTT-GACGTTGTCAATGGTGTCGGAGGACTCGAC 52647
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850
|| | || || || || || || || ||||| ||
Sbjct 52648 TTCGAGGGTAATGGTCTTTCCGGTAAGGGTCTTGAC 52683
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462296990315600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |