Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cercospora_20cf._20sigesbeckiae_20[genbank_20GCA_5F002217505.1_20201
7-07-13] 1,945 sequences; 34,940,764 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq680 111 3e-19
>seq680
Length=821847
Score = 111 bits (122), Expect = 3e-19
Identities = 558/873 (64%), Gaps = 21/873 (2%)
Strand=Plus/Plus
Query 229780 ATGTGGGATATGTACAAGAAGGCGGTGGCAACTTTCTGGACCACTGAGGAAGTTCCTCTG 229839
|| ||| | |||||||||||||| | |||| | |||||||| | || || || ||||
Sbjct 340306 ATATGGAACATGTACAAGAAGGCCGAGGCATCATTCTGGACTGCCGAAGAGATTGATCTG 340365
Query 229840 AACGCAGACGTCGTCGACTGGCGTGAGAAACTCAATGACGACGAACGTCATTTCATCAAA 229899
| || || ||||||| || ||||||||||||||| || |||||| |
Sbjct 340366 TCCAAGGATCTCCACGACTGGAACAAGCGACTCAATGACGACGAGCGCTTCTTCATCTCA 340425
Query 229900 CACATCCTAGGTTTTTTCGCAGGCTCCGATGGTATTGTGATGGAAAATCTGCA-GACCAA 229958
||| |||| | || ||||| | ||||| || ||||| | || || ||| || | |
Sbjct 340426 CACGTCCTTGCATTCTTCGCCGCATCCGACGGCATTGTCAACGAGAACCTGGTCGAGCGA 340485
Query 229959 CTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCAATTTTATGCTTACCAAACATTCAA 230018
|| || | || || | || |||||||| || || | | ||| | | |
Sbjct 340486 -TTCAGCGCCGAGGTGCAAATACCGGAGGCACGATGCTTCTACGGCTTCCAGATCATGAT 340544
Query 230019 CGAATCTATCCATTCTGAACAATATGCTCTGCTTATCGACGCGCTTATTTCCGACGAGC- 230077
|| ||||| || || ||| | || || |||||| | || || | |||||
Sbjct 340545 GGAGAACATCCACTCCGAGACATACTCCCTCCTCATCGACACA--TACATCAG-CGAGCC 340601
Query 230078 -AAGAACGGAACG-AGCTTTTTGATGCCATTGAAAACATCCCGGCGGTTCATAACAAGGC 230135
||| | |||| | || || | ||||| || |||||||| | | | |||||
Sbjct 340602 CAAGCAGCGAACATACCTCTTCAACGCCATCGACAACATCCCTTGTATCCGCAGAAAGGC 340661
Query 230136 AAAGTGGGCTCAGAAATGG--CTAGAACCTGGTAAATCGTTTGCCGA-GCGTCTCGTCGC 230192
| ||||| | | |||| || | || || | ||| | | ||| | ||||
Sbjct 340662 TGACTGGGCACTGCGATGGATCTCGGACAAGGACTCTACTTTCGCTATGCGATTGATCGC 340721
Query 230193 CTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCG-CCATCTTTTGGCTGC 230251
|| | ||| || ||||| | || ||||| ||| ||| ||||||| ||| ||
Sbjct 340722 CTTTGCTGCTGTCGAGGGTATCTTCTTCTCCGGCTCATTC-GCGTCCATCTTCTGGTTGA 340780
Query 230252 GGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGG 230311
||| ||| | ||| |||||||| | || |||||| ||||| || |||||||
Sbjct 340781 AGAAGCGTGGTCTCATGGCTGGCCTCACCTTCTCCAACGAGCTCATCTCCCGTGACGAGG 340840
Query 230312 GTCTCCATCAACAGTTCGGCGAGCTTATGTATTCAAAGCTCCAGAACAAGCTACCATTCG 230371
| | || | |||| || ||| || | ||| ||||||||| | |
Sbjct 340841 GCATGCACACTGACTTCGCTTGCCTGCTGTTCTCTCACCTCAAGAACAAGCCCGC---CA 340897
Query 230372 AGACGGTCAAACAAATCATTACAG---AAGCAGTTGAAAACGAAAAGGAGTTCATTTGTG 230428
|| ||||| |||| ||| | | | || |||| | || | || ||| | |
Sbjct 340898 AGTCGGTCGTGCAAAGCATCATCGTGGAGGCCGTTGCCATTGAGCAAGAATTCTTGACCG 340957
Query 230429 ACGCTATTCCATGTCGC-CTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAA 230487
| ||| | || || ||| || | |||||||||||| | || ||| | |||||||| ||
Sbjct 340958 ATGCTCTGCCTTG-CGCGCTGCTCGGCATGAACGCTAAGCTCATGTGCCAGTACATTGAG 341016
Query 230488 TTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAAC 230547
|| || || ||||| | | | || ||||| || | || | |||||| | | |||
Sbjct 341017 TTTGTCGCTGACCGACTGCTGCTCGCTCTTGGCAACCAAAAGTTCTACAACGCCACCAAC 341076
Query 230548 CCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGT 230607
||||| | || |||||| ||| || || || ||||||||||||||||| ||||||
Sbjct 341077 CCCTTCGACTTCATGGAGAACATCTCTCTCGGCGGCAAGACCAACTTCTTCGAGAAGCGT 341136
Query 230608 GTCAGTGACTATCAGAGGCCTGGTGTGATGAAG 230640
|| | ||||| |||| | | ||||| ||| ||
Sbjct 341137 GTTGGCGACTACCAGAAGGCCGGTGTCATGGAG 341169
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1057797638695350
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |