Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercospora_20cf._20sigesbeckiae_20[genbank_20GCA_5F002217505.1_20201 7-07-13] 1,945 sequences; 34,940,764 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq680 111 3e-19 >seq680 Length=821847 Score = 111 bits (122), Expect = 3e-19 Identities = 558/873 (64%), Gaps = 21/873 (2%) Strand=Plus/Plus Query 229780 ATGTGGGATATGTACAAGAAGGCGGTGGCAACTTTCTGGACCACTGAGGAAGTTCCTCTG 229839 || ||| | |||||||||||||| | |||| | |||||||| | || || || |||| Sbjct 340306 ATATGGAACATGTACAAGAAGGCCGAGGCATCATTCTGGACTGCCGAAGAGATTGATCTG 340365 Query 229840 AACGCAGACGTCGTCGACTGGCGTGAGAAACTCAATGACGACGAACGTCATTTCATCAAA 229899 | || || ||||||| || ||||||||||||||| || |||||| | Sbjct 340366 TCCAAGGATCTCCACGACTGGAACAAGCGACTCAATGACGACGAGCGCTTCTTCATCTCA 340425 Query 229900 CACATCCTAGGTTTTTTCGCAGGCTCCGATGGTATTGTGATGGAAAATCTGCA-GACCAA 229958 ||| |||| | || ||||| | ||||| || ||||| | || || ||| || | | Sbjct 340426 CACGTCCTTGCATTCTTCGCCGCATCCGACGGCATTGTCAACGAGAACCTGGTCGAGCGA 340485 Query 229959 CTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCAATTTTATGCTTACCAAACATTCAA 230018 || || | || || | || |||||||| || || | | ||| | | | Sbjct 340486 -TTCAGCGCCGAGGTGCAAATACCGGAGGCACGATGCTTCTACGGCTTCCAGATCATGAT 340544 Query 230019 CGAATCTATCCATTCTGAACAATATGCTCTGCTTATCGACGCGCTTATTTCCGACGAGC- 230077 || ||||| || || ||| | || || |||||| | || || | ||||| Sbjct 340545 GGAGAACATCCACTCCGAGACATACTCCCTCCTCATCGACACA--TACATCAG-CGAGCC 340601 Query 230078 -AAGAACGGAACG-AGCTTTTTGATGCCATTGAAAACATCCCGGCGGTTCATAACAAGGC 230135 ||| | |||| | || || | ||||| || |||||||| | | | ||||| Sbjct 340602 CAAGCAGCGAACATACCTCTTCAACGCCATCGACAACATCCCTTGTATCCGCAGAAAGGC 340661 Query 230136 AAAGTGGGCTCAGAAATGG--CTAGAACCTGGTAAATCGTTTGCCGA-GCGTCTCGTCGC 230192 | ||||| | | |||| || | || || | ||| | | ||| | |||| Sbjct 340662 TGACTGGGCACTGCGATGGATCTCGGACAAGGACTCTACTTTCGCTATGCGATTGATCGC 340721 Query 230193 CTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCG-CCATCTTTTGGCTGC 230251 || | ||| || ||||| | || ||||| ||| ||| ||||||| ||| || Sbjct 340722 CTTTGCTGCTGTCGAGGGTATCTTCTTCTCCGGCTCATTC-GCGTCCATCTTCTGGTTGA 340780 Query 230252 GGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGG 230311 ||| ||| | ||| |||||||| | || |||||| ||||| || ||||||| Sbjct 340781 AGAAGCGTGGTCTCATGGCTGGCCTCACCTTCTCCAACGAGCTCATCTCCCGTGACGAGG 340840 Query 230312 GTCTCCATCAACAGTTCGGCGAGCTTATGTATTCAAAGCTCCAGAACAAGCTACCATTCG 230371 | | || | |||| || ||| || | ||| ||||||||| | | Sbjct 340841 GCATGCACACTGACTTCGCTTGCCTGCTGTTCTCTCACCTCAAGAACAAGCCCGC---CA 340897 Query 230372 AGACGGTCAAACAAATCATTACAG---AAGCAGTTGAAAACGAAAAGGAGTTCATTTGTG 230428 || ||||| |||| ||| | | | || |||| | || | || ||| | | Sbjct 340898 AGTCGGTCGTGCAAAGCATCATCGTGGAGGCCGTTGCCATTGAGCAAGAATTCTTGACCG 340957 Query 230429 ACGCTATTCCATGTCGC-CTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAA 230487 | ||| | || || ||| || | |||||||||||| | || ||| | |||||||| || Sbjct 340958 ATGCTCTGCCTTG-CGCGCTGCTCGGCATGAACGCTAAGCTCATGTGCCAGTACATTGAG 341016 Query 230488 TTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAAC 230547 || || || ||||| | | | || ||||| || | || | |||||| | | ||| Sbjct 341017 TTTGTCGCTGACCGACTGCTGCTCGCTCTTGGCAACCAAAAGTTCTACAACGCCACCAAC 341076 Query 230548 CCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGT 230607 ||||| | || |||||| ||| || || || ||||||||||||||||| |||||| Sbjct 341077 CCCTTCGACTTCATGGAGAACATCTCTCTCGGCGGCAAGACCAACTTCTTCGAGAAGCGT 341136 Query 230608 GTCAGTGACTATCAGAGGCCTGGTGTGATGAAG 230640 || | ||||| |||| | | ||||| ||| || Sbjct 341137 GTTGGCGACTACCAGAAGGCCGGTGTCATGGAG 341169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057797638695350