Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cercospora_20cf._20sigesbeckiae_20[genbank_20GCA_5F002217505.1_20201
7-07-13] 1,945 sequences; 34,940,764 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq680 131 2e-25
>seq680
Length=821847
Score = 131 bits (144), Expect = 2e-25
Identities = 296/441 (67%), Gaps = 8/441 (2%)
Strand=Plus/Minus
Query 16193 AACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAA 16252
|||| || || |||||||| || | || ||||| | | ||| || ||||||||
Sbjct 340871 AACAGCAGGCAAGCGAAGTCAGTGTGCATGCCCTCGTCACGGGAGATGAGCTCGTTGGAG 340812
Query 16253 AAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCC 16312
|| || | || | ||| || || ||||| |||||||| || | || ||||| ||
Sbjct 340811 AAGGTGAGGCCAGCCATGAGACCACGCTTCTTCAACCAGAAGATGGACGCGAATGAGCCG 340752
Query 16313 GAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCT 16372
|| ||||| |||||||| |||| ||||| ||||| ||||| ||| | |||| ||
Sbjct 340751 GAGAAGAAGATACCCTCGACAGCAGCAAAGGCGATCAATCGCATAGCGAAAGTAGAGTCC 340692
Query 16373 TTATTACGA-ATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTC 16431
|| | ||| |||||| | || |||| || || ||| |||||| || | ||
Sbjct 340691 TTGTC-CGAGATCCATCGCAGTGCCCAGTCAGCCTTTCTGCGGATACAAGGGATGTTGTC 340633
Query 16432 TATGGCCTTAAACAATTTCTCTTTTTCCTGAATA---TCGATTATATACGTATCAATCAG 16488
||||| || || | | | || ||| | ||| | || || || || || ||
Sbjct 340632 GATGGCGTTGAAGAGGTA---TGTTCGCTGCTTGGGCTCGCTGATGTATGTGTCGATGAG 340576
Query 16489 TAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCG 16548
| ||| | || ||||| |||||||| || ||||| || || |||||||||||
Sbjct 340575 GAGGGAGTATGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCG 340516
Query 16549 AGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACC 16608
||||||| |||||| || || || ||||| || |||||||||| || || || ||
Sbjct 340515 TGCCTCCGGTATTTGCACCTCGGCGCTGAATCGCTCGACCAGGTTCTCGTTGACAATGCC 340456
Query 16609 GTCACTTGCAGCAAAAAACGC 16629
||| ||| || || || ||
Sbjct 340455 GTCGGATGCGGCGAAGAATGC 340435
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511401966237400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |