Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercospora_20cf._20sigesbeckiae_20[genbank_20GCA_5F002217505.1_20201 7-07-13] 1,945 sequences; 34,940,764 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq680 131 2e-25 >seq680 Length=821847 Score = 131 bits (144), Expect = 2e-25 Identities = 296/441 (67%), Gaps = 8/441 (2%) Strand=Plus/Minus Query 16193 AACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAA 16252 |||| || || |||||||| || | || ||||| | | ||| || |||||||| Sbjct 340871 AACAGCAGGCAAGCGAAGTCAGTGTGCATGCCCTCGTCACGGGAGATGAGCTCGTTGGAG 340812 Query 16253 AAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCC 16312 || || | || | ||| || || ||||| |||||||| || | || ||||| || Sbjct 340811 AAGGTGAGGCCAGCCATGAGACCACGCTTCTTCAACCAGAAGATGGACGCGAATGAGCCG 340752 Query 16313 GAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCT 16372 || ||||| |||||||| |||| ||||| ||||| ||||| ||| | |||| || Sbjct 340751 GAGAAGAAGATACCCTCGACAGCAGCAAAGGCGATCAATCGCATAGCGAAAGTAGAGTCC 340692 Query 16373 TTATTACGA-ATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTC 16431 || | ||| |||||| | || |||| || || ||| |||||| || | || Sbjct 340691 TTGTC-CGAGATCCATCGCAGTGCCCAGTCAGCCTTTCTGCGGATACAAGGGATGTTGTC 340633 Query 16432 TATGGCCTTAAACAATTTCTCTTTTTCCTGAATA---TCGATTATATACGTATCAATCAG 16488 ||||| || || | | | || ||| | ||| | || || || || || || Sbjct 340632 GATGGCGTTGAAGAGGTA---TGTTCGCTGCTTGGGCTCGCTGATGTATGTGTCGATGAG 340576 Query 16489 TAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCG 16548 | ||| | || ||||| |||||||| || ||||| || || ||||||||||| Sbjct 340575 GAGGGAGTATGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCG 340516 Query 16549 AGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACC 16608 ||||||| |||||| || || || ||||| || |||||||||| || || || || Sbjct 340515 TGCCTCCGGTATTTGCACCTCGGCGCTGAATCGCTCGACCAGGTTCTCGTTGACAATGCC 340456 Query 16609 GTCACTTGCAGCAAAAAACGC 16629 ||| ||| || || || || Sbjct 340455 GTCGGATGCGGCGAAGAATGC 340435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511401966237400