Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cercospora_20cf._20sigesbeckiae_20[genbank_20GCA_5F002217505.1_20201
7-07-13] 1,945 sequences; 34,940,764 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq411 172 7e-38
>seq411
Length=240905
Score = 172 bits (190), Expect = 7e-38
Identities = 623/963 (65%), Gaps = 14/963 (1%)
Strand=Plus/Minus
Query 53705 GCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCA 53764
|||| |||||| || || || ||||| ||||| | | | | || | || ||||||
Sbjct 124645 GCAAGAGATGCAAGGTTGCACACGGCGACCTCGTCTGGTGCGGTGTACTCAATGATCTCA 124586
Query 53765 GTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 53824
||||| | || || |||||| ||||| | || | || || ||||| |||
Sbjct 124585 GTGCACAAGTTGGAACTCTTGATCGTTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCA 124526
Query 53825 GCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTC 53884
|||||||| || || ||||| || |||||| ||| |||||| ||| | || || | |
Sbjct 124525 GCATCCTTGTAGAGCATGAAAGGTCCACCAGTCTCAGTCTGGGCTTCCAAGATAGCATAC 124466
Query 53885 CAGACGACACGAGCCTTTATTATAG-ATTTGTATCTCTTTTCTCTTTCGTATAGTGTATA 53943
||||| |||| | | | | | | || |||| ||||| | || ||
Sbjct 124465 CAGACCTTTTGAGCGCGGACAGTCTCACGTCCACGACCTT-CTCTCTCGTAGCGGGTGTA 124407
Query 53944 CAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACAT 54003
|| || |||||||| || | |||| | | ||||| || |||| || |||||
Sbjct 124406 CAGCTCCTCGAACTCGTCACCGTACACATCAGCGAGACCAGGGCACTCATTGGGGCACAT 124347
Query 54004 CAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC 54063
| | ||| ||| ||| | | || || ||||| || ||||| || |||||||||||
Sbjct 124346 GAGTGTCCATTCTGCGTTGGCTTCGACACGCTTCATGAACAGATCTGGGATCCAAAGAGC 124287
Query 54064 TATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 54123
| || ||||| | | | |||||| ||||| ||||| || || | |||
Sbjct 124286 GAAGAACAGATCACGTGCACGCACTTCCTCCTTTCCGTGGTTCTTGCGGAGGTCCATGAA 124227
Query 54124 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTT 54183
| || | ||| | ||||| || || | ||| |||| | | ||||| || |||||
Sbjct 124226 GGAGATGACATCTGCGTGCCATGGCTCTAGGTAGATGGCGAACGCGCCAGGACGCTTGTT 124167
Query 54184 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 54243
|| || || || | || | || |||||||| || || | |||||| || || | |||
Sbjct 124166 GCCACCTTGGTCGACATAGCGGGCAGTGTTATTGTAGACGCGCAACATCGGGATGAGACC 124107
Query 54244 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 54303
|||||||| || || || || | || || |||| | ||||| || || | |
Sbjct 124106 ATTGGATGTGCCGTTTGTGCCTGCAATGTATGATCCAGTAGCACGGATCTT-GTGGCAGT 124048
Query 54304 T-AGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGA 54362
| || || || || || || | || ||||| | ||||| || | || || ||||
Sbjct 124047 TCAGGCCAATACCACCAGCATTCTTCGAGATCATGGCGCAAGTCTTCAGTGTGTCGTAGA 123988
Query 54363 TGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACA--TTTGGTGACG 54420
| ||||| || || |||||| |||||| | | || || || || | || ||
Sbjct 123987 TACCCTCAATGCTGTCATCCTTCATGTCGATCAAGAAGCATGAAGCCAACTGTGCATTCG 123928
Query 54421 ACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTT-TTCAGAAAGTA 54479
| || || || | || | ||||| |||||||| || || |||| ||| | |||
Sbjct 123927 GC--GTACCAGCGCTGAACAGTGTAGGCGAAGCGTGTGTGAAGTATTTGTTCGACATGTA 123870
Query 54480 GATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCA 54539
| ||||| ||||| || || | || ||||| || ||||| || || |||||||
Sbjct 123869 G-TTGTAGGTCTCAATGGCGGCCTCGATATCGTCGCCGTGGATTCCAACAGCCACACGCA 123811
Query 54540 TTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTT 54599
| | ||||||||| ||||| || | | ||| | || |||||||| || ||
Sbjct 123810 TGATCATGTGCTGTGGTCTCTCGGCAACTTTGCCATCAATGCGGAGCAAGTATGAGCGTT 123751
Query 54600 CCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACTGA 54657
||| || || |||||||| || | ||| ||||| |||| || || | ||| | ||
Sbjct 123750 CCAGCGTCTTGAAACCAAAGTATTGGTAGTTGAAA--TCTCTGTCATAGACAATGGCAGA 123693
Query 54658 GTT 54660
|||
Sbjct 123692 GTT 123690
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593707165143600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |