Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cercospora_20cf._20sigesbeckiae_20[genbank_20GCA_5F002217505.1_20201
7-07-13] 1,945 sequences; 34,940,764 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq680 311 9e-80
seq530 136 4e-27
seq455 125 7e-24
seq653 107 2e-18
seq671 93.3 4e-14
>seq680
Length=821847
Score = 311 bits (344), Expect = 9e-80
Identities = 566/809 (70%), Gaps = 27/809 (3%)
Strand=Plus/Plus
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| ||| ||||||||| ||||||||||| || |||||||| | ||| ||| | || |||
Sbjct 340306 ATATGGAACATGTACAAGAAGGCCGAGGCATCATTCTGGACTGCCGAAGAGATTGATCTG 340365
Query 116696 TCCAAGGA-CACGAGCGACTGGGA---GCGCTTGAACGACAACGAGCGCCATTTCATCAA 116751
|||||||| | | | ||||||| | ||| | || ||| |||||||| ||||||
Sbjct 340366 TCCAAGGATCTCCA-CGACTGGAACAAGCGACTCAATGACGACGAGCGCTTCTTCATCTC 340424
Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811
||||| || || || |||||||| ||||||||| ||||||||||| |||||||||||
Sbjct 340425 ACACGTCCTTGCATTCTTCGCCGCATCCGACGGCATTGTCAACGAGAACCTGGTCGAGCG 340484
Query 116812 TTTC-GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCA 116870
||| || | |||||||| | | ||||| || |||||||||||||| |||||| |
Sbjct 340485 ATTCAGCGC-CGAGGTGCAAATACCGGAGGCACGATGCTTCTACGGCTTCCAGATCATGA 340543
Query 116871 TGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT--GCGCTCTTC 116928
|||||||| | ||||| || | || || |||||||||||| ||| | ||| |
Sbjct 340544 TGGAGAACATCCACTCCGAGACATACTCCCTCCTCATCGACACATACATCAGCGAGCCCA 340603
Query 116929 GGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGT-CAAAGAGAAGG 116987
| | ||| | | | || ||||||||||| | || || || | | ||| ||||
Sbjct 340604 AGCAGCGAACATAC--CTCTTCAACGCCATCGACAACATCCCTTGTATCCGCAGA-AAGG 340660
Query 116988 CCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGG 117047
| || ||||| ||||| |||||| | | || || | | |||| ||| || | |
Sbjct 340661 CTGACTGGGCACTGCGATGGATCTCGGACAAGGACTCTACTTTCGCTATGCGATTGATCG 340720
Query 117048 CCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCA 117107
|||| || || |||||||| ||||||| || ||| ||||| |||| || ||| | |
Sbjct 340721 CCTTTGCTGCTGTCGAGGGTATCTTCTTCTCCGGCTCATTCGCGTCCATCTTCTGGTTGA 340780
Query 117108 AGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167
|||| || || |||||| | ||||| || ||| |||||||||||||||| | |||||||
Sbjct 340781 AGAAGCGTGGTCTCATGGCTGGCCTCACCTTCTCCAACGAGCTCATCTCCCGTGACGAGG 340840
Query 117168 GTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGG 117227
| |||| ||||| || || |||||||| || | || || | ||| ||
Sbjct 340841 GCATGCACACTGACTTCGCTTGCCTGCTGTTCTCTCACCT----CA-AGAACAAGCCCGC 340895
Query 117228 C--GCGCGTCAGGGAGATCGTCACC---GACGCGGTCGCCATCGAGCAGCGCTTCCTCAC 117282
| | ||| | | | | ||| | || || || ||||| ||||| ||| | ||
Sbjct 340896 CAAGTCGGTCGTGCAAAGCATCATCGTGGAGGCCGTTGCCATTGAGCAAGAATTCTTGAC 340955
Query 117283 CGAAGCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATC 117340
||| || ||||| |||| ||||| || | || || || | |||| || |||||
Sbjct 340956 CGATGCTCTGCC-TTGCGCGCTGCTCGGCATGAA-CGCTAAGCTCATGTGCCAGTACATT 341013
Query 117341 GAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCC 117400
||||| ||||| ||| | |||||||||| || | | | ||| ||||||| | ||
Sbjct 341014 GAGTTTGTCGCTGACCGACTGCTGCTCGCTCTTGGCAACCAAAAGTTCTACAACGCCACC 341073
Query 117401 AACCCGCTGGACTTTATGAACCTCATCTC 117429
||||| | ||||| ||| | ||||||
Sbjct 341074 AACCCCTTCGACTTCATGGAGAACATCTC 341102
>seq530
Length=291
Score = 136 bits (150), Expect = 4e-27
Identities = 159/215 (74%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || ||||| ||||| |||||||| | || ||||| | | |
Sbjct 265 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTTGAGGTCGAGTCGAGC 206
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | ||||| || || | ||||| ||||||||||| ||||||||
Sbjct 205 GACACTATCGACAATGTCAAGTCCAAGATCCAAGACAAGGAGGGCATCCCACCGGACCAG 146
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || || |||| ||||||||| ||| |||| || | ||||| || |||||||||
Sbjct 145 CAGCGCCTGATCTTCGCGGGCAAGCAGTTGGAGGATGGTCGCACACTATCAGACTACAAC 86
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904
|||||||||||| ||| ||||| | ||| ||||
Sbjct 85 ATCCAGAAGGAGAGCACACTGCACTTGGTGCTGCG 51
>seq455
Length=1194790
Score = 125 bits (138), Expect = 7e-24
Identities = 159/216 (74%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| || || ||||| ||||| || || || | || || ||| | |
Sbjct 1130759 ATGCAAATCTTCGTCAAGACACTCACAGGCAAGACGATTACGTTGGAGGTAGAATCATCG 1130700
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | |||| | ||| || || | ||||| ||||| ||||| |||||||
Sbjct 1130699 GACACCATCGACAACG-TGAAGAGCAAGATCCAAGACAAGGAGGGTATCCCACCGGACCA 1130641
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || || |||| ||||||||| ||| |||| || | ||||| || ||||||||
Sbjct 1130640 GCAGCGCCTGATCTTCGCGGGCAAGCAGTTGGAGGATGGTCGCACACTATCAGACTACAA 1130581
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904
||||||||||||| ||| ||||| | ||| ||||
Sbjct 1130580 CATCCAGAAGGAGAGCACACTGCACTTGGTGCTGCG 1130545
Score = 122 bits (134), Expect = 9e-23
Identities = 140/186 (75%), Gaps = 2/186 (1%)
Strand=Plus/Minus
Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGA 40772
|| ||||| || |||||| |||| || || | | ||||| | | | |||| |||||
Sbjct 1131191 ACCGGCAAGACTATCACCCTCGAGGTGGAGTCTAGCGACACCATCGACAACG-TCAAGTC 1131133
Query 40773 AAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAA 40832
|| |||| ||||| |||||||| || |||||||||| || ||||| | ||| |||||
Sbjct 1131132 GAAGATTCAGGACAAGGAGGGCATTCCTCCGGACCAGCAGCGTCTCATTTTCGCTGGCAA 1131073
Query 40833 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892
|| || || |||| || ||||| ||| |||||||||||||||||| |||| || ||
Sbjct 1131072 GCAACTCGAGGACGGCCGTACCCTGTCCGATTACAACATCCAGAAGGAGTCCACCCTCCA 1131013
Query 40893 TCTAGT 40898
||| ||
Sbjct 1131012 TCTCGT 1131007
Score = 114 bits (126), Expect = 1e-20
Identities = 140/191 (73%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || ||||| ||||| |||||||| | || ||||| | | |
Sbjct 1130987 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTTGAGGTCGAGTCGAGC 1130928
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | ||||| || || | ||||| ||||||||||| ||||||||
Sbjct 1130927 GACACTATCGACAATGTCAAGTCCAAGATCCAAGACAAGGAGGGCATCCCACCGGACCAG 1130868
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || | |||| ||| ||||| || || || |||| ||||| ||| |||||||||
Sbjct 1130867 CAGCGCTTGATCTTCGCCGGCAAGCAACTCGAAGACGGCCGCACTCTCTCGGACTACAAC 1130808
Query 40870 ATCCAGAAGGA 40880
||||| |||||
Sbjct 1130807 ATCCAAAAGGA 1130797
>seq653
Length=579839
Score = 107 bits (118), Expect = 2e-18
Identities = 100/127 (79%), Gaps = 0/127 (0%)
Strand=Plus/Minus
Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825
||||| || |||| ||||| ||||| ||||| |||||||||| || | |||| ||
Sbjct 344732 TCAAGAGCAAGATTCAGGACAAGGAGGGAATCCCACCGGACCAGCAGCGCTTGATCTTCG 344673
Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCA 40885
| ||||| ||||| || || | ||||| |||| |||||||||||||||||||||| |||
Sbjct 344672 CCGGCAAGCAGCTCGAGGATGGCCGCACTCTCAGCGACTACAACATCCAGAAGGAGTCCA 344613
Query 40886 CGCTGCA 40892
| || ||
Sbjct 344612 CCCTCCA 344606
>seq671
Length=186828
Score = 93.3 bits (102), Expect = 4e-14
Identities = 129/181 (71%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758
||||| || || ||||| ||||| || |||||| | || || || | | || | | |
Sbjct 53807 TTCGTCAAGACCCTCACCGGCAAGACTATCACCCTTGAGGTGGAGTCGTCGGATACCATC 53866
Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818
| | ||||| || || | ||||| |||||||| ||| |||||||||| || |
Sbjct 53867 GACAATGTCAAGAGCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGTTTG 53926
Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878
|||| ||| || || || |||| || | ||||| || |||||||||||||||||||
Sbjct 53927 ATCTTCGCTGGAAAGCAATTGGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAAG 53986
Query 40879 G 40879
|
Sbjct 53987 G 53987
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515206673733200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |