Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercospora_20cf._20sigesbeckiae_20[genbank_20GCA_5F002217505.1_20201 7-07-13] 1,945 sequences; 34,940,764 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq680 311 9e-80 seq530 136 4e-27 seq455 125 7e-24 seq653 107 2e-18 seq671 93.3 4e-14 >seq680 Length=821847 Score = 311 bits (344), Expect = 9e-80 Identities = 566/809 (70%), Gaps = 27/809 (3%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || ||| ||||||||| ||||||||||| || |||||||| | ||| ||| | || ||| Sbjct 340306 ATATGGAACATGTACAAGAAGGCCGAGGCATCATTCTGGACTGCCGAAGAGATTGATCTG 340365 Query 116696 TCCAAGGA-CACGAGCGACTGGGA---GCGCTTGAACGACAACGAGCGCCATTTCATCAA 116751 |||||||| | | | ||||||| | ||| | || ||| |||||||| |||||| Sbjct 340366 TCCAAGGATCTCCA-CGACTGGAACAAGCGACTCAATGACGACGAGCGCTTCTTCATCTC 340424 Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811 ||||| || || || |||||||| ||||||||| ||||||||||| ||||||||||| Sbjct 340425 ACACGTCCTTGCATTCTTCGCCGCATCCGACGGCATTGTCAACGAGAACCTGGTCGAGCG 340484 Query 116812 TTTC-GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCA 116870 ||| || | |||||||| | | ||||| || |||||||||||||| |||||| | Sbjct 340485 ATTCAGCGC-CGAGGTGCAAATACCGGAGGCACGATGCTTCTACGGCTTCCAGATCATGA 340543 Query 116871 TGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT--GCGCTCTTC 116928 |||||||| | ||||| || | || || |||||||||||| ||| | ||| | Sbjct 340544 TGGAGAACATCCACTCCGAGACATACTCCCTCCTCATCGACACATACATCAGCGAGCCCA 340603 Query 116929 GGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGT-CAAAGAGAAGG 116987 | | ||| | | | || ||||||||||| | || || || | | ||| |||| Sbjct 340604 AGCAGCGAACATAC--CTCTTCAACGCCATCGACAACATCCCTTGTATCCGCAGA-AAGG 340660 Query 116988 CCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGG 117047 | || ||||| ||||| |||||| | | || || | | |||| ||| || | | Sbjct 340661 CTGACTGGGCACTGCGATGGATCTCGGACAAGGACTCTACTTTCGCTATGCGATTGATCG 340720 Query 117048 CCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCA 117107 |||| || || |||||||| ||||||| || ||| ||||| |||| || ||| | | Sbjct 340721 CCTTTGCTGCTGTCGAGGGTATCTTCTTCTCCGGCTCATTCGCGTCCATCTTCTGGTTGA 340780 Query 117108 AGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167 |||| || || |||||| | ||||| || ||| |||||||||||||||| | ||||||| Sbjct 340781 AGAAGCGTGGTCTCATGGCTGGCCTCACCTTCTCCAACGAGCTCATCTCCCGTGACGAGG 340840 Query 117168 GTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGG 117227 | |||| ||||| || || |||||||| || | || || | ||| || Sbjct 340841 GCATGCACACTGACTTCGCTTGCCTGCTGTTCTCTCACCT----CA-AGAACAAGCCCGC 340895 Query 117228 C--GCGCGTCAGGGAGATCGTCACC---GACGCGGTCGCCATCGAGCAGCGCTTCCTCAC 117282 | | ||| | | | | ||| | || || || ||||| ||||| ||| | || Sbjct 340896 CAAGTCGGTCGTGCAAAGCATCATCGTGGAGGCCGTTGCCATTGAGCAAGAATTCTTGAC 340955 Query 117283 CGAAGCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATC 117340 ||| || ||||| |||| ||||| || | || || || | |||| || ||||| Sbjct 340956 CGATGCTCTGCC-TTGCGCGCTGCTCGGCATGAA-CGCTAAGCTCATGTGCCAGTACATT 341013 Query 117341 GAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCC 117400 ||||| ||||| ||| | |||||||||| || | | | ||| ||||||| | || Sbjct 341014 GAGTTTGTCGCTGACCGACTGCTGCTCGCTCTTGGCAACCAAAAGTTCTACAACGCCACC 341073 Query 117401 AACCCGCTGGACTTTATGAACCTCATCTC 117429 ||||| | ||||| ||| | |||||| Sbjct 341074 AACCCCTTCGACTTCATGGAGAACATCTC 341102 >seq530 Length=291 Score = 136 bits (150), Expect = 4e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| |||||||| | || ||||| | | | Sbjct 265 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTTGAGGTCGAGTCGAGC 206 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | ||||| || || | ||||| ||||||||||| |||||||| Sbjct 205 GACACTATCGACAATGTCAAGTCCAAGATCCAAGACAAGGAGGGCATCCCACCGGACCAG 146 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||||||||| ||| |||| || | ||||| || ||||||||| Sbjct 145 CAGCGCCTGATCTTCGCGGGCAAGCAGTTGGAGGATGGTCGCACACTATCAGACTACAAC 86 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||| ||| ||||| | ||| |||| Sbjct 85 ATCCAGAAGGAGAGCACACTGCACTTGGTGCTGCG 51 >seq455 Length=1194790 Score = 125 bits (138), Expect = 7e-24 Identities = 159/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| ||||| || || || | || || ||| | | Sbjct 1130759 ATGCAAATCTTCGTCAAGACACTCACAGGCAAGACGATTACGTTGGAGGTAGAATCATCG 1130700 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | ||| || || | ||||| ||||| ||||| ||||||| Sbjct 1130699 GACACCATCGACAACG-TGAAGAGCAAGATCCAAGACAAGGAGGGTATCCCACCGGACCA 1130641 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||||||||| ||| |||| || | ||||| || |||||||| Sbjct 1130640 GCAGCGCCTGATCTTCGCGGGCAAGCAGTTGGAGGATGGTCGCACACTATCAGACTACAA 1130581 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||||||| ||| ||||| | ||| |||| Sbjct 1130580 CATCCAGAAGGAGAGCACACTGCACTTGGTGCTGCG 1130545 Score = 122 bits (134), Expect = 9e-23 Identities = 140/186 (75%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGA 40772 || ||||| || |||||| |||| || || | | ||||| | | | |||| ||||| Sbjct 1131191 ACCGGCAAGACTATCACCCTCGAGGTGGAGTCTAGCGACACCATCGACAACG-TCAAGTC 1131133 Query 40773 AAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAA 40832 || |||| ||||| |||||||| || |||||||||| || ||||| | ||| ||||| Sbjct 1131132 GAAGATTCAGGACAAGGAGGGCATTCCTCCGGACCAGCAGCGTCTCATTTTCGCTGGCAA 1131073 Query 40833 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 || || || |||| || ||||| ||| |||||||||||||||||| |||| || || Sbjct 1131072 GCAACTCGAGGACGGCCGTACCCTGTCCGATTACAACATCCAGAAGGAGTCCACCCTCCA 1131013 Query 40893 TCTAGT 40898 ||| || Sbjct 1131012 TCTCGT 1131007 Score = 114 bits (126), Expect = 1e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| |||||||| | || ||||| | | | Sbjct 1130987 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTTGAGGTCGAGTCGAGC 1130928 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | ||||| || || | ||||| ||||||||||| |||||||| Sbjct 1130927 GACACTATCGACAATGTCAAGTCCAAGATCCAAGACAAGGAGGGCATCCCACCGGACCAG 1130868 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | |||| ||| ||||| || || || |||| ||||| ||| ||||||||| Sbjct 1130867 CAGCGCTTGATCTTCGCCGGCAAGCAACTCGAAGACGGCCGCACTCTCTCGGACTACAAC 1130808 Query 40870 ATCCAGAAGGA 40880 ||||| ||||| Sbjct 1130807 ATCCAAAAGGA 1130797 >seq653 Length=579839 Score = 107 bits (118), Expect = 2e-18 Identities = 100/127 (79%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825 ||||| || |||| ||||| ||||| ||||| |||||||||| || | |||| || Sbjct 344732 TCAAGAGCAAGATTCAGGACAAGGAGGGAATCCCACCGGACCAGCAGCGCTTGATCTTCG 344673 Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCA 40885 | ||||| ||||| || || | ||||| |||| |||||||||||||||||||||| ||| Sbjct 344672 CCGGCAAGCAGCTCGAGGATGGCCGCACTCTCAGCGACTACAACATCCAGAAGGAGTCCA 344613 Query 40886 CGCTGCA 40892 | || || Sbjct 344612 CCCTCCA 344606 >seq671 Length=186828 Score = 93.3 bits (102), Expect = 4e-14 Identities = 129/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || ||||| ||||| || |||||| | || || || | | || | | | Sbjct 53807 TTCGTCAAGACCCTCACCGGCAAGACTATCACCCTTGAGGTGGAGTCGTCGGATACCATC 53866 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| || || | ||||| |||||||| ||| |||||||||| || | Sbjct 53867 GACAATGTCAAGAGCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGTTTG 53926 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||| || || || |||| || | ||||| || ||||||||||||||||||| Sbjct 53927 ATCTTCGCTGGAAAGCAATTGGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAAG 53986 Query 40879 G 40879 | Sbjct 53987 G 53987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515206673733200