Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cercospora_20cf._20sigesbeckiae_20[genbank_20GCA_5F002217505.1_20201
7-07-13] 1,945 sequences; 34,940,764 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq455 114 1e-20
seq530 111 1e-19
seq653 102 7e-17
seq671 93.3 4e-14
>seq455
Length=1194790
Score = 114 bits (126), Expect = 1e-20
Identities = 134/181 (74%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595
|||| || ||||| || || |||||||||||| || || || |||||||| ||
Sbjct 1131013 TGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGACAGGGTACGGCCGTCCTCGAGTTGC 1131072
Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655
|| |||||| | |||||||||||||| || ||||| |||||||||||||| ||| ||
Sbjct 1131073 TTGCCAGCGAAAATGAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTTC 1131132
Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715
|| || | |||| |||||| | ||| ||||||| ||| | || |||||||||
Sbjct 1131133 GACTTGACGTTGTCGATGGTGTCGCTAGACTCCACCTCGAGGGTGATAGTCTTGCCGGTC 1131192
Query 118716 A 118716
|
Sbjct 1131193 A 1131193
Score = 107 bits (118), Expect = 2e-18
Identities = 161/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569
|||| || |||| | | ||||||||||| || || || ||||| |||||||| ||
Sbjct 1130759 TACCACCTCGTAGACGAAGCACCAAGTGGAGAGTCGATTCCTTTTGGATGTTGTAGTCCG 1130818
Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629
| |||||| || ||||| || || || ||| |||| | |||||||| || || |
Sbjct 1130819 AGAGAGTGCGGCCGTCTTCGAGTTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGTG 1130878
Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689
| ||||||||||||||| || || || || | |||| ||||| | |||||
Sbjct 1130879 GGATGCCCTCCTTGTCTTGGATCTTGGACTTGACATTGTCGATAGTGTCGCTCGACTCGA 1130938
Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|||| | || | || |||||||| || || || || || ||||||||
Sbjct 1130939 CCTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 1130987
Score = 105 bits (116), Expect = 6e-18
Identities = 164/230 (71%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571
||||| || | | || ||||||||| | ||| ||| || || |||||||| || |
Sbjct 1130533 CCTCCACGAAGACGCAGCACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGTAGTC--TG 1130590
Query 118572 ATAGTGCGCGT--ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629
|||||| ||| |||||| | ||| || || ||| |||| || |||||||| || || |
Sbjct 1130591 ATAGTGTGCGACCATCCTCCAACTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCCGGTG 1130650
Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCG 118688
| || |||||||||||| || || || || | |||| |||||||| || | ||
Sbjct 1130651 GGATACCCTCCTTGTCTTGGATCTTGCTCTTCACGTTGTCGATGGTGTCCGATGAT-TCT 1130709
Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||||| | || | ||| ||||| || || || || || || || |||||
Sbjct 1130710 ACCTCCAACGTAATCGTCTTGCCTGTGAGTGTCTTGACGAAGATTTGCAT 1130759
>seq530
Length=291
Score = 111 bits (122), Expect = 1e-19
Identities = 163/229 (71%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571
||||| || | | || ||||||||| | ||| ||| || || |||||||| || |
Sbjct 39 CCTCCACGAAGACGCAGCACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGTAGTC--TG 96
Query 118572 ATAGTGCGCGT--ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629
|||||| ||| |||||| | ||| || || ||| |||| || |||||||| || || |
Sbjct 97 ATAGTGTGCGACCATCCTCCAACTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCCGGTG 156
Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689
| ||||||||||||||| || || || || | |||| ||||| | |||||
Sbjct 157 GGATGCCCTCCTTGTCTTGGATCTTGGACTTGACATTGTCGATAGTGTCGCTCGACTCGA 216
Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|||| | || | || |||||||| || || || || || ||||||||
Sbjct 217 CCTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 265
>seq653
Length=579839
Score = 102 bits (112), Expect = 7e-17
Identities = 112/149 (75%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||||||||| || ||||| || || |||||||| ||||| | |||||| |||||||
Sbjct 344600 ACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGAGTGCGGCCATCCTCG 344659
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
||||| || || ||| |||| | |||||||| || || || || ||||||||||| |
Sbjct 344660 AGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTGA 344719
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTC 118678
|| || || || | |||| ||||||
Sbjct 344720 ATCTTGCTCTTGACATTGTCGATGGTGTC 344748
>seq671
Length=186828
Score = 93.3 bits (102), Expect = 4e-14
Identities = 128/179 (72%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610
|| || |||||||| ||| || |||||| |||||| | || ||||||||| ||||
Sbjct 53985 TTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAATTGCTTTCCAGCGAAGATC 53926
Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670
| ||||||||| || || || |||||||||||||| || || || || | |||
Sbjct 53925 AAACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGTCG 53866
Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 118729
| ||| |||| ||| ||||| | ||| | || |||||||| || || || || ||
Sbjct 53865 ATGGTATCCGACGACTCCACCTCAAGGGTGATAGTCTTGCCGGTGAGGGTCTTGACGAA 53807
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433820116185940
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |