Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercospora_20cf._20sigesbeckiae_20[genbank_20GCA_5F002217505.1_20201 7-07-13] 1,945 sequences; 34,940,764 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq455 114 1e-20 seq530 111 1e-19 seq653 102 7e-17 seq671 93.3 4e-14 >seq455 Length=1194790 Score = 114 bits (126), Expect = 1e-20 Identities = 134/181 (74%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| || ||||| || || |||||||||||| || || || |||||||| || Sbjct 1131013 TGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGACAGGGTACGGCCGTCCTCGAGTTGC 1131072 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 || |||||| | |||||||||||||| || ||||| |||||||||||||| ||| || Sbjct 1131073 TTGCCAGCGAAAATGAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTTC 1131132 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715 || || | |||| |||||| | ||| ||||||| ||| | || ||||||||| Sbjct 1131133 GACTTGACGTTGTCGATGGTGTCGCTAGACTCCACCTCGAGGGTGATAGTCTTGCCGGTC 1131192 Query 118716 A 118716 | Sbjct 1131193 A 1131193 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || |||| | | ||||||||||| || || || ||||| |||||||| || Sbjct 1130759 TACCACCTCGTAGACGAAGCACCAAGTGGAGAGTCGATTCCTTTTGGATGTTGTAGTCCG 1130818 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | |||||| || ||||| || || || ||| |||| | |||||||| || || | Sbjct 1130819 AGAGAGTGCGGCCGTCTTCGAGTTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGTG 1130878 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | ||||||||||||||| || || || || | |||| ||||| | ||||| Sbjct 1130879 GGATGCCCTCCTTGTCTTGGATCTTGGACTTGACATTGTCGATAGTGTCGCTCGACTCGA 1130938 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| | || | || |||||||| || || || || || |||||||| Sbjct 1130939 CCTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 1130987 Score = 105 bits (116), Expect = 6e-18 Identities = 164/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| || | | || ||||||||| | ||| ||| || || |||||||| || | Sbjct 1130533 CCTCCACGAAGACGCAGCACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGTAGTC--TG 1130590 Query 118572 ATAGTGCGCGT--ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 |||||| ||| |||||| | ||| || || ||| |||| || |||||||| || || | Sbjct 1130591 ATAGTGTGCGACCATCCTCCAACTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCCGGTG 1130650 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCG 118688 | || |||||||||||| || || || || | |||| |||||||| || | || Sbjct 1130651 GGATACCCTCCTTGTCTTGGATCTTGCTCTTCACGTTGTCGATGGTGTCCGATGAT-TCT 1130709 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| | || | ||| ||||| || || || || || || || ||||| Sbjct 1130710 ACCTCCAACGTAATCGTCTTGCCTGTGAGTGTCTTGACGAAGATTTGCAT 1130759 >seq530 Length=291 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| || | | || ||||||||| | ||| ||| || || |||||||| || | Sbjct 39 CCTCCACGAAGACGCAGCACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGTAGTC--TG 96 Query 118572 ATAGTGCGCGT--ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 |||||| ||| |||||| | ||| || || ||| |||| || |||||||| || || | Sbjct 97 ATAGTGTGCGACCATCCTCCAACTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCCGGTG 156 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | ||||||||||||||| || || || || | |||| ||||| | ||||| Sbjct 157 GGATGCCCTCCTTGTCTTGGATCTTGGACTTGACATTGTCGATAGTGTCGCTCGACTCGA 216 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| | || | || |||||||| || || || || || |||||||| Sbjct 217 CCTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 265 >seq653 Length=579839 Score = 102 bits (112), Expect = 7e-17 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||||| || ||||| || || |||||||| ||||| | |||||| ||||||| Sbjct 344600 ACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGAGTGCGGCCATCCTCG 344659 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || ||| |||| | |||||||| || || || || ||||||||||| | Sbjct 344660 AGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTGA 344719 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTC 118678 || || || || | |||| |||||| Sbjct 344720 ATCTTGCTCTTGACATTGTCGATGGTGTC 344748 >seq671 Length=186828 Score = 93.3 bits (102), Expect = 4e-14 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || || |||||||| ||| || |||||| |||||| | || ||||||||| |||| Sbjct 53985 TTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAATTGCTTTCCAGCGAAGATC 53926 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 | ||||||||| || || || |||||||||||||| || || || || | ||| Sbjct 53925 AAACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGTCG 53866 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 118729 | ||| |||| ||| ||||| | ||| | || |||||||| || || || || || Sbjct 53865 ATGGTATCCGACGACTCCACCTCAAGGGTGATAGTCTTGCCGGTGAGGGTCTTGACGAA 53807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433820116185940