Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cercospora_20cf._20sigesbeckiae_20[genbank_20GCA_5F002217505.1_20201
7-07-13] 1,945 sequences; 34,940,764 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq530 138 1e-27
seq455 120 3e-22
>seq530
Length=291
Score = 138 bits (152), Expect = 1e-27
Identities = 171/234 (73%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 42950 CTATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTA 43009
|||||| ||||| | | ||||| |||||| |||| |||||||||||| || || |||||
Sbjct 32 CTATTGCCCTCCACGAAGACGCAGCACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGTA 91
Query 43010 ATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 43069
|| | || || || | || || | |||||| || ||||| || || |||||||||||
Sbjct 92 GTCTGATAGTGTGCGACCATCCTCCAACTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTC 151
Query 43070 GGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGA 43129
| || | || ||||||||| ||| || |||| | | | |||||||||||
Sbjct 152 CGGTGGGATGCCCTCCTTGTCTTGGATCTTGGACTTGACATTGTCGATAGTGTCGCTCGA 211
Query 43130 TTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|| || || | |||||||| ||||| || || ||||| || ||||| |||||
Sbjct 212 CTCGACCTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 265
>seq455
Length=1194790
Score = 120 bits (132), Expect = 3e-22
Identities = 169/235 (72%), Gaps = 2/235 (1%)
Strand=Plus/Plus
Query 42950 CTATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTA 43009
|||||| ||||| | | ||||| |||||| |||| |||||||||||| || || |||||
Sbjct 1130526 CTATTGCCCTCCACGAAGACGCAGCACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGTA 1130585
Query 43010 ATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 43069
|| | || || || | || || | |||||| || ||||| || || |||||||||||
Sbjct 1130586 GTCTGATAGTGTGCGACCATCCTCCAACTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTC 1130645
Query 43070 GGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCG 43128
| || | | ||||||||| ||| || || | ||| | | | ||||| |
Sbjct 1130646 CGGTGGGATACCCTCCTTGTCTTGGATCTTGCTCTTCA-CGTTGTCGATGGTGTCCGATG 1130704
Query 43129 ATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|||| || || | ||| || || ||||| || || ||||| || |||||||||||
Sbjct 1130705 ATTCTACCTCCAACGTAATCGTCTTGCCTGTGAGTGTCTTGACGAAGATTTGCAT 1130759
Score = 113 bits (124), Expect = 5e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016
|| |||| || ||| | |||||| || | || |||||||| || ||||| || |
Sbjct 1130761 CCACCTCGTAGACGAAGCACCAAGTGGAGAGTCGATTCCTTTTGGATGTTGTAGTCCGAG 1130820
Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076
||||| || |||| || || ||||| || ||||| || | ||||||||||| | ||
Sbjct 1130821 AGAGTGCGGCCGTCTTCGAGTTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGTGGG 1130880
Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136
| || ||||||||| ||| || |||| | | | ||||||||||| || ||
Sbjct 1130881 ATGCCCTCCTTGTCTTGGATCTTGGACTTGACATTGTCGATAGTGTCGCTCGACTCGACC 1130940
Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|| | |||||||| ||||| || || ||||| || ||||| |||||
Sbjct 1130941 TCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 1130987
Score = 107 bits (118), Expect = 2e-18
Identities = 129/170 (76%), Gaps = 4/170 (2%)
Strand=Plus/Plus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || || |||||||| | ||| || || |||| || || ||||| ||||||||
Sbjct 1131024 CTCCTTCTGGATGTTGTAATCGGACAGGGTACGGCCGTCCTCGAGTTGCTTGCCAGCGAA 1131083
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110
||||| ||||||||||| | || | || |||||||||| ||| | || | |||| ||
Sbjct 1131084 AATGAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCC-TGAATCTTCGACTTGA-CG 1131141
Query 43111 TCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 43159
| | | | |||||||| || ||||| |||| ||||| || ||||| ||
Sbjct 1131142 TTGTCGATGGTGTCGCTAGACTCCACCTCGAGGGTGATAGTCTTGCCGGT 1131191
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571803697684600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |