Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercospora_20cf._20sigesbeckiae_20[genbank_20GCA_5F002217505.1_20201 7-07-13] 1,945 sequences; 34,940,764 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq530 140 2e-28 seq455 122 6e-23 seq671 104 2e-17 >seq530 Length=291 Score = 140 bits (154), Expect = 2e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || | |||||||| ||| | || || || ||||| ||||||||||| || Sbjct 39 CCTCCACGAAGACGCAGCACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGTAGTCTGAT 98 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || |||||||||||||| ||||| || || ||||||||||| || Sbjct 99 AGTGTGCGACCATCCTCCAACTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCCGGTGGG 158 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | || | | || | ||| |||| ||||| Sbjct 159 ATGCCCTCCTTGTCTTGGATCTTGGACTTGACATTGTCGATAGTGTCGCTCGACTCGACC 218 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| ||||||||||| || || || ||||||||||| Sbjct 219 TCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 265 >seq455 Length=1194790 Score = 122 bits (134), Expect = 6e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| ||| | ||| ||| || || ||||||||||| || || ||| |||| Sbjct 1130776 AGCACCAAGTGGAGAGTCGATTCCTTTTGGATGTTGTAGTCCGAGAGAGTGCGGCCGTCT 1130835 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||||| ||||| || | ||||||||||| || | || ||||||||| Sbjct 1130836 TCGAGTTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCT 1130895 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | | || | ||| |||| ||||| || | |||||||| Sbjct 1130896 TGGATCTTGGACTTGACATTGTCGATAGTGTCGCTCGACTCGACCTCAAGAGTGATGGTC 1130955 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||||||||| || || || ||||||||||| Sbjct 1130956 TTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 1130987 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || | |||||||| ||| | || || || ||||| ||||||||||| || Sbjct 1130533 CCTCCACGAAGACGCAGCACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGTAGTCTGAT 1130592 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || |||||||||||||| ||||| || || ||||||||||| || Sbjct 1130593 AGTGTGCGACCATCCTCCAACTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCCGGTGGG 1130652 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | | | | || | || | ||||| || Sbjct 1130653 ATACCCTCCTTGTCTTGGATCTTGCTCTTCACGTTGTCGATGGTGTCCGATGATTCTACC 1130712 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| ||| || || ||||| ||||| || || || ||||| ||||| Sbjct 1130713 TCCAACGTAATCGTCTTGCCTGTGAGTGTCTTGACGAAGATTTGCAT 1130759 Score = 95.1 bits (104), Expect = 8e-15 Identities = 121/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| |||||||| |||||||| |||| |||| || | |||||||| |||||| Sbjct 1131025 TCCTTCTGGATGTTGTAATCGGACAGGGTACGGCCGTCCTCGAGTTGCTTGCCAGCGAAA 1131084 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 ||||| ||||||||||| || | || ||||||||| ||||| ||| | | | Sbjct 1131085 ATGAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTTCGACTTGACGTTG 1131144 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGT 34365 | || | ||| | || || || || | ||||| || |||||||| Sbjct 1131145 TCGATGGTGTCGCTAGACTCCACCTCGAGGGTGATAGTCTTGCCGGT 1131191 >seq671 Length=186828 Score = 104 bits (114), Expect = 2e-17 Identities = 131/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 34202 TTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATG 34261 ||||| ||||||||||||||||| ||| | || ||||| ||||| || ||||| || Sbjct 53985 TTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAATTGCTTTCCAGCGAAGATC 53926 Query 34262 AGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCT 34321 | ||||||||||| ||| | || ||||||||| ||||| ||| | || | | Sbjct 53925 AAACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGTCG 53866 Query 34322 ATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAG 34381 || | ||| | ||| || || || | ||||| || ||||||||||| || || || ||| Sbjct 53865 ATGGTATCCGACGACTCCACCTCAAGGGTGATAGTCTTGCCGGTGAGGGTCTTGACGAAG 53806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323064341679200