Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cercospora_20cf._20sigesbeckiae_20[genbank_20GCA_5F002217505.1_20201
7-07-13] 1,945 sequences; 34,940,764 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq455 129 5e-25
seq530 107 2e-18
seq671 96.9 3e-15
seq653 95.1 1e-14
>seq455
Length=1194790
Score = 129 bits (142), Expect = 5e-25
Identities = 154/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
||||||||||| |||||||||||||| ||||||||||| ||| |||| | || |||
Sbjct 1130551 ACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGTAGTCTGATAGTGTGCGACCATCCTCC 1130610
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
| || || || ||||| |||| ||||| ||||| || || | ||||||||||||
Sbjct 1130611 AACTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCCGGTGGGATACCCTCCTTGTCTTGG 1130670
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | ||||| || ||||||| ||||||||||||
Sbjct 1130671 ATCTTGCTCTTCACGTTGTCGATGGTGTCCGATGATTCTACCTCCAACGTAATCGTCTTG 1130730
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| || || ||||| || |||||||||||
Sbjct 1130731 CCTGTGAGTGTCTTGACGAAGATTTGCAT 1130759
Score = 93.3 bits (102), Expect = 3e-14
Identities = 129/181 (71%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193
|| || ||| ||||||||| |||||||| ||| ||| || |||| || |||||
Sbjct 1131013 TGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGACAGGGTACGGCCGTCCTCGAGTTGC 1131072
Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253
|| || ||||| || | ||||| ||||| ||||| | |||||||||||| ||| ||
Sbjct 1131073 TTGCCAGCGAAAATGAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTTC 1131132
Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313
||| || | | | |||| | | ||||||||| | ||| || |||||||| |||
Sbjct 1131133 GACTTGACGTTGTCGATGGTGTCGCTAGACTCCACCTCGAGGGTGATAGTCTTGCCGGTC 1131192
Query 45314 A 45314
|
Sbjct 1131193 A 1131193
>seq530
Length=291
Score = 107 bits (118), Expect = 2e-18
Identities = 149/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
||||||||||| |||||||||||||| ||||||||||| ||| |||| | || |||
Sbjct 57 ACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGTAGTCTGATAGTGTGCGACCATCCTCC 116
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
| || || || ||||| |||| ||||| ||||| || || | |||||||||||
Sbjct 117 AACTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCTTGG 176
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | |||| | ||| ||||| | || || ||||||
Sbjct 177 ATCTTGGACTTGACATTGTCGATAGTGTCGCTCGACTCGACCTCAAGAGTGATGGTCTTG 236
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| || || ||||| || ||||| |||||
Sbjct 237 CCGGTGAGGGTCTTGACGAAGATCTGCAT 265
>seq671
Length=186828
Score = 96.9 bits (106), Expect = 3e-15
Identities = 134/188 (71%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 45141 TGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGG 45200
||| | ||||||| |||||||||||| ||| ||| | || |||| ||| ||||| |
Sbjct 53993 TGCGCACCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAATTGCTTTCCAG 53934
Query 45201 CGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAA 45260
|||| ||||| ||||| ||||| || || | |||||||||||| || || ||| |
Sbjct 53933 CGAAGATCAAACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGA 53874
Query 45261 CCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCT 45320
| | | | | ||| ||||||||| | ||| || |||||||| || || ||||
Sbjct 53873 CATTGTCGATGGTATCCGACGACTCCACCTCAAGGGTGATAGTCTTGCCGGTGAGGGTCT 53814
Query 45321 TCACAAAG 45328
| || |||
Sbjct 53813 TGACGAAG 53806
>seq653
Length=579839
Score = 95.1 bits (104), Expect = 1e-14
Identities = 96/125 (77%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||||||| || ||| ||||||||| |||||||||||| | || ||| | || ||
Sbjct 344600 ACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGAGTGCGGCCATCCTCG 344659
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || |||||||| ||||| ||||| ||||| || || | |||||||||||| |
Sbjct 344660 AGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTGA 344719
Query 45248 ATTTT 45252
|| ||
Sbjct 344720 ATCTT 344724
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395065834865845
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |