Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercospora_20cf._20sigesbeckiae_20[genbank_20GCA_5F002217505.1_20201 7-07-13] 1,945 sequences; 34,940,764 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq411 392 3e-104 seq680 221 1e-52 seq455 93.3 4e-14 seq530 86.0 6e-12 >seq411 Length=240905 Score = 392 bits (434), Expect = 3e-104 Identities = 1151/1746 (66%), Gaps = 44/1746 (3%) Strand=Plus/Minus Query 22256 TGATCGATAAACGCTCCTCGATCGGCGGCCATATTTATCAATGTACGCATCGAC--ATTT 22313 |||||||| || || || || || |||||||| || | |||||| || ||| |||| Sbjct 125410 TGATCGATGAAGGCACCGCGGTCCGCGGCCAT-TTGAACAATGTT-GCGCTGACTGATTT 125353 Query 22314 CCCATACGGTCTTGTACAGTTGCCTGATCTCTAACGGTATCGATTCG--ATCCTCTGGAC 22371 |||| || |||||||||| | ||| || ||| || |||| || | || || Sbjct 125352 CCCAGACAGTCTTGTACAACGCCTTGAGGTCGTCCGGAATG--TTCGGAATGCGTTGCAC 125295 Query 22372 GGACCCGTTATTGTGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGT 22431 ||| ||| | | ||||| || || || | || |||||| || | || Sbjct 125294 GGAACCGCCGTCGGCGATGATGCGGTTCTTCATGTTCTCAGACCACAATCCACGGTCGAC 125235 Query 22432 CAAATCTTTGACCAG--ATGACGGTTCACCACTTGAAACTCGCCGGACAAG-ACGCGGCG 22488 | ||| || | || ||| |||| || ||||| || || |||| |||| || || || Sbjct 125234 GAGATCCTTCAGCAACCATG--GGTTGACGACTTGGAATTCTCCGG-CAAGCACACGACG 125178 Query 22489 TTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGT 22548 ||| |||||| ||| | || ||||| | || ||| |||| ||||| | || Sbjct 125177 AGAGTAGATGTTGCTAGTGTATGGCTCGAAGCACTCGTTGAAGCCCATGATCTGCGATGT 125118 Query 22549 CGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTT 22608 || || || ||||| || || | ||| || ||||| | | ||||||| | || || Sbjct 125117 GGAGGCAGTAGGCATTGGTGCAACCAGAAGGGAGTTGCGGACACCGTGCTGAGCGATCTT 125058 Query 22609 ACTCTTGAGCATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTA 22668 ||||||| ||||||||| || || || || || || | ||||||| ||||| Sbjct 125057 GGCCTTGAGCGCGTCCCAGTCCCAGAGGTCTGAAGGTGTGAC---GCCCCACATCTCGTA 125001 Query 22669 TTGCAACACGCCGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGC 22728 || | |||| ||||| ||| |||||||| ||||| |||||| | | || Sbjct 125000 CTGAAGTTCGCCCTTTGAAACCGGGGAGCCCTCGTACGTCTCGTATGGACCA-AGCTTGC 124942 Query 22729 G-GCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGT 22787 ||||| ||||| || | ||| ||| || || ||||||||||| | || Sbjct 124941 TAGCAAGGTCGCACGATGCGGTGAGCGCAGCGTGGTAGATGGTCTCGAAGATCTGGACGT 124882 Query 22788 TCAATTCGGCGGC----GGCGACGCTTTCGTACGGCATACGCATCATCACGAACGCGTCC 22843 ||| | ||| || ||| || | ||||| || | || ||| || || Sbjct 124881 TCAGGTGACGGGCCTCTGGAGAC----TCAAAAGGCATGCGTAGAGCCAGGAAAGCATCA 124826 Query 22844 GCCATACC-CTGAACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACACTTTTGCCTC 22902 || | ||| |||| | || | |||||| |||| || || || | || ||||| Sbjct 124825 GCAAGACCGCTGA-CACCGAGACCGATTGGTCTGTGGCGCATGTTGCTCTTCTTCGCCTC 124767 Query 22903 GGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGT 22962 |||| || || || ||||| | |||||||||| |||| || | || | Sbjct 124766 AGGCACTGGGTAGTGGTTGACTTCGATGATCTTGTTCAAGTTCTTGGTGACGACTTGCAC 124707 Query 22963 TATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGATTGTACAACAA--ACTT--GTTGA 23018 | ||||||||| |||||| || || | ||| | || | |||| Sbjct 124706 AACCTCGTGGAGCTTCTCAAAGTCG-AAACGCTCG-TTCT-CAAGATCGACGTAGGTTGG 124650 Query 23019 CGGCGATCGAG--GCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAAT 23076 | | | ||| ||||| ||||| ||||| ||||||||| | |||||||| | || Sbjct 124649 CAGAGCAAGAGATGCAAGGTTGCACACGGCGACCTCGTCTGGTGCGGTGTACTCAATGAT 124590 Query 23077 TTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATT 23136 || || || | ||| || ||| ||||| || | || |||||||||| || || || Sbjct 124589 CTCAGTGCACAAGTTGGAACTCTTGATCGTTCCGAGGTTCTTCTGGTTGCTCTTGCGGTT 124530 Query 23137 GCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGC 23196 | | |||||||||||||||| | || || ||||| ||| | || | ||| || Sbjct 124529 GGCAGCATCCTTGTAGAGCATGAAAGGTCCACCAGTCTCAGTCTGGGCTTCCAAGATAGC 124470 Query 23197 TCGCCACATAGTCTGAGCGTGAACACGTCGCACGTAC-CTGCCTTCTTCCTCGTACTTTT 23255 ||| | | |||||| | ||| ||| ||||| | | |||||| |||||| Sbjct 124469 ATACCAGACCTTTTGAGCGCGGACA-GTCTCACGTCCACGACCTTCTCTCTCGTAGCGGG 124411 Query 23256 GGTACAACGCGTCAAATTCGGCACCGTA-ACAGTCGGCCAGGCCGGGCGATTGCATCGGA 23314 ||||| | | || || ||| ||||||| ||| || || || || || | | | || Sbjct 124410 TGTACAGCTCCTCGAACTCGTCACCGTACACA-TCAGCGAGACCAGGGCACTCATTGGGG 124352 Query 23315 CACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCAT 23374 |||||||| |||| || || ||| || || |||| || ||||| || ||||| Sbjct 124351 CACATGAGTGTCCATTCTGCGTTGGCTTCGACACGCTTCATGAACAGATCTGGGATCCAA 124292 Query 23375 AGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCC 23434 |||||| ||||||| || || || ||||| ||||| || ||| |||||| | ||| Sbjct 124291 AGAGCGAAGAACAGATCACGTGCACGCACTTCCTCCTTTCCGTGGTTCTTGCGGAGGTCC 124232 Query 23435 AAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTC 23494 | ||| | || || || ||||| ||||| ||||| | ||| |||||||| || | | Sbjct 124231 ATGAAGGAGATGACATCTGCGTGCCATGGCTCTAGGTAGATGGCGAACGCGCCAGGACGC 124172 Query 23495 TTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACG 23554 || ||||| || || ||||| || ||||| ||||| ||||| || | | |||||| | | Sbjct 124171 TTGTTGCCACCTTGGTCGACATAGCGGGCAGTGTTATTGTAGACGCGCAACATCGGGATG 124112 Query 23555 AGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGA 23614 ||||| ||||| | |||| | ||| || | || || | || || | ||||| Sbjct 124111 AGACCATTGGATGTGCCGTTTGTGCCTGCAATGTATGATCCAGTAGCACGGATCTTGTGG 124052 Query 23615 ACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCG 23674 || | || || || || | ||||| ||||| ||||| ||||| |||||| Sbjct 124051 CAGTTCAGGCCAATACCACCAGCATTCTTCGAGATCATGGCGCAAGTCTTCAGTGTGTCG 123992 Query 23675 TAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCT 23734 ||||| ||||| |||||||| || || | ||| |||||| || |||| || || || Sbjct 123991 TAGATACCCTCAATGCTGTCATCCTTCATGTCGATCAAGAAGCATGAAGCCAACTGTGCA 123932 Query 23735 TTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACAT- 23793 || |||||| | || ||||||||| || ||||| || |||||| |||||||| Sbjct 123931 TTCGGCGTACCAGCGCTGAACAGTGTAGGCGAAGCGTGTGTGAAGTATTTGTTCGACATG 123872 Query 23794 TAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCG 23853 ||| ||||| || || |||||||| || || || || ||||| || || | || || || Sbjct 123871 TAG-TTGTAGGTCTCAATGGCGGCCTCGATATCGTCGCCGTGGATTCCAACAGCCACACG 123813 Query 23854 CATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACG 23913 ||| ||||||| || ||||||||| | ||| | ||| || || ||||| || Sbjct 123812 CATGATCATGTGCTGTGGTCTCTCGGCAACTTTGCCATCAATGCGGAGCAAGTATGAGCG 123753 Query 23914 TTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGA 23973 || || ||| || || ||||| || | ||||| || || | || | || ||||| || Sbjct 123752 TTCCAGCGTCTTGAAACCAAAGTATTGGTAGTTGAAATCTCTGTCATAGACAATGGCAGA 123693 Query 23974 ATTCAA 23979 ||||| Sbjct 123692 GTTCAA 123687 >seq680 Length=821847 Score = 221 bits (244), Expect = 1e-52 Identities = 578/871 (66%), Gaps = 23/871 (3%) Strand=Plus/Plus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || |||||||||||||| ||||| || ||||| || ||||| | |||||| | || ||| Sbjct 340306 ATATGGAACATGTACAAGAAGGCCGAGGCATCATTCTGGACTGCCGAAGAGATTGATCTG 340365 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCCC---TCAAAGAATCTGAGAGAAATTTTATTAAA 57686 || |||||||| ||| ||| | | |||| || ||| | || || | Sbjct 340366 TCCAAGGATCTCCACGACTGGAACAAGCGACTCAATGACGACGAGCGCTTCTTCATCTCA 340425 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 ||||| | || || |||||||||||||| || ||||| |||||||| ||||||| || Sbjct 340426 CACGTCCTTGCATTCTTCGCCGCATCCGACGGCATTGTCAACGAGAACCTGGTCGAGCGA 340485 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 || || |||||| | ||||||| ||||||| ||||| || || | || Sbjct 340486 TTCAGCGCCGAGGTGCAAATACCGGAGGCACGATGCTTCTACGGCTTCCAGATCATGATG 340545 Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGAC 57866 || ||| | || || || | || || || |||||||| || ||| | | || | | Sbjct 340546 GAGAACATCCACTCCGAGACATACTCCCTCCTCATCGACACATACATCAGCGAGCCCAAG 340605 Query 57867 GAGA-AACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGA 57925 || ||| || || |||||||| ||||| | || || ||| || ||||| || Sbjct 340606 CAGCGAACATAC-CTCTTCAACGCCATCGACAACATCCCTTGTATCCGCAGAAAGGCTGA 340664 Query 57926 GTGGTCAATCAAATGGATAAAAAGCGCCACGGCC---ACGTTCGCCGAGAGGCTAATCGC 57982 ||| || | |||||| | || || | || ||||| | | | ||||| Sbjct 340665 CTGGGCACTGCGATGGATCTCG---GACAAGGACTCTACTTTCGCTATGCGATTGATCGC 340721 Query 57983 GTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAA 58042 || || || ||||| ||||| ||||| || ||| || ||| | || || ||| |||| Sbjct 340722 CTTTGCTGCTGTCGAGGGTATCTTCTTCTCCGGCTCATTCGCGTCCATCTTCTGGTTGAA 340781 Query 58043 GAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGG 58102 ||| || || || ||| | ||||| || || ||||||| | || || || |||||||| Sbjct 340782 GAAGCGTGGTCTCATGGCTGGCCTCACCTTCTCCAACGAGCTCATCTCCCGTGACGAGGG 340841 Query 58103 TCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGCGGGA 58162 | || ||||| || || ||||| ||| ||||||| | || || || ||| Sbjct 340842 CATGCACACTGACTTCGCTTGCCTGCTGTTCTCTCACCTCAAGAACAAGCC--CGCCAAG 340899 Query 58163 TCGCATCTTGGACATTATCACCG---AGGCGGTCGCGATCGAAAATGAGTTTGTCACCGA 58219 ||| || || | | |||| || |||| || || || || | || || | ||||| Sbjct 340900 TCGG-TCGTGCAAAGCATCATCGTGGAGGCCGTTGCCATTGAGCAAGAATTCTTGACCGA 340958 Query 58220 AGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTT 58279 || || || || ||||||| |||||| | | | |||| ||||||||||||| Sbjct 340959 TGCTCTGCCTTGCGCGCTGCTCGGCATGAACGCTAAGCTCATGTGCCAGTACATTGAGTT 341018 Query 58280 TGTTGCCGACAGACTTTTGCTCGAACTGATTGGAGAGCGTCA---TTACAACACGAAAAA 58336 ||| || ||| |||| |||||| || |||| | | | |||||| | | || Sbjct 341019 TGTCGCTGACCGACTGCTGCTCG--CT-CTTGGCAACCAAAAGTTCTACAACGCCACCAA 341075 Query 58337 TCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGaaaaaaa 58396 || || || || ||| | ||||| |||| |||||||| ||||| ||||| || Sbjct 341076 CCCCTTCGACTTCATGGAGAACATCTCTCTCGGCGGCAAGACCAACTTCTTCGAGAAGCG 341135 Query 58397 aGTTAGCGAATATCAAAAATACGGCGTGATG 58427 ||| |||| || || || ||| || ||| Sbjct 341136 TGTTGGCGACTACCAGAAGGCCGGTGTCATG 341166 >seq455 Length=1194790 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || ||||| || ||||| | || || || || | Sbjct 1130987 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTTGAGGTCGAGTCGAGC 1130928 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| | ||||| | || |||||||| ||| | || || |||||| Sbjct 1130927 GACACTATCGACAATGTCAAGTCCAAGATCCAAGACAAGGAGGGCATCCCACCGGACCAG 1130868 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| | || ||||| ||||| || | |||||| ||| | || || ||| Sbjct 1130867 CAGCGCTTGATCTTCGCCGGCAAGCAACTCGAAGACGGCCGCACTCTCTCGGACTACAAC 1130808 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || ||||| ||||||||||| || |||| ||| | || | || |||| Sbjct 1130807 ATCCAAAAGGAATCGACTCTCCACTTGGTGCTTCGTCTACGAGGTGGTA 1130759 Score = 87.8 bits (96), Expect = 2e-12 Identities = 116/158 (73%), Gaps = 6/158 (4%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| || |||||||| ||||| || | || || ||| | || Sbjct 1130759 ATGCAAATCTTCGTCAAGACACTCACAGGCAAGACGATTACGTTGGAGGTAGAATCATCG 1130700 Query 31253 GACAGTGTCGAAACGGTCAAACAGAG-AATAGCG--GACAAGGAAGGCGTGCCGCCCGAC 31309 |||| |||| | || || ||| || | | |||||||| || | || || ||| Sbjct 1130699 GACACCATCGACAACGTGAA---GAGCAAGATCCAAGACAAGGAGGGTATCCCACCGGAC 1130643 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||||| || || ||||| ||||| |||||||| || Sbjct 1130642 CAGCAGCGCCTGATCTTCGCGGGCAAGCAGTTGGAGGA 1130605 Score = 86.0 bits (94), Expect = 6e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 31215 TGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAAC 31274 |||| ||||| || |||||| |||| || || | ||||| |||| | ||||| Sbjct 1131193 TGACCGGCAAGACTATCACCCTCGAGGTGGAGTCTAGCGACACCATCGACAACGTCAAGT 1131134 Query 31275 AGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCA 31334 || || ||||||||| ||| | || || |||||||||||||| || |||||||||| Sbjct 1131133 CGAAGATTCAGGACAAGGAGGGCATTCCTCCGGACCAGCAGCGTCTCATTTTCGCTGGCA 1131074 Query 31335 AACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTC 31394 | || | || ||| || || |||||| ||||| || || || || || || | Sbjct 1131073 AGCAACTCGAGGACGGCCGTACCCTGTCCGATTACAACATCCAGAAGGAGTCCACCCTCC 1131014 Query 31395 ATCTGGTACT 31404 |||| || || Sbjct 1131013 ATCTCGTCCT 1131004 >seq530 Length=291 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || ||||| || ||||| | || || || || | Sbjct 265 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTTGAGGTCGAGTCGAGC 206 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| | ||||| | || |||||||| ||| | || || |||||| Sbjct 205 GACACTATCGACAATGTCAAGTCCAAGATCCAAGACAAGGAGGGCATCCCACCGGACCAG 146 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||| || || ||||| ||||| |||||||| || Sbjct 145 CAGCGCCTGATCTTCGCGGGCAAGCAGTTGGAGGA 111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445755562304400