Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cercospora_20cf._20sigesbeckiae_20[genbank_20GCA_5F002217505.1_20201
7-07-13] 1,945 sequences; 34,940,764 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq411 188 9e-43
seq680 120 4e-22
>seq411
Length=240905
Score = 188 bits (208), Expect = 9e-43
Identities = 607/933 (65%), Gaps = 8/933 (1%)
Strand=Plus/Minus
Query 62943 GCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCA 63002
|||| |||||| || || |||||||| ||||| | | | | || | || ||||||
Sbjct 124645 GCAAGAGATGCAAGGTTGCACACGGCGACCTCGTCTGGTGCGGTGTACTCAATGATCTCA 124586
Query 63003 GTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 63062
||||| | || || |||||| ||||| | || | || || ||||| |||
Sbjct 124585 GTGCACAAGTTGGAACTCTTGATCGTTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCA 124526
Query 63063 GCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 63122
|||||||| || || ||||| || |||||| ||| |||| | ||| | || || | |
Sbjct 124525 GCATCCTTGTAGAGCATGAAAGGTCCACCAGTCTCAGTCTGGGCTTCCAAGATAGCATAC 124466
Query 63123 CAGACGACTCGAGCCTTTATTATAG-ATTTGTATCTCCTTTCTCTTTCGTATAGAGTATA 63181
||||| | |||| | | | | | |||| |||| ||||| | || ||
Sbjct 124465 CAGACCTTTTGAGCGCGGACAGTCTCACGTCCACGACCTT-CTCTCTCGTAGCGGGTGTA 124407
Query 63182 CAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACAT 63241
|| ||||||||||| || | |||| | | | ||| || |||| || |||||
Sbjct 124406 CAGCTCCTCGAACTCGTCACCGTACACATCAGCGAGACCAGGGCACTCATTGGGGCACAT 124347
Query 63242 CAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC 63301
| | ||| ||| ||| | | || || ||||| || ||||| || |||||||||||
Sbjct 124346 GAGTGTCCATTCTGCGTTGGCTTCGACACGCTTCATGAACAGATCTGGGATCCAAAGAGC 124287
Query 63302 TATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 63361
| || ||||| | || | |||||| ||||| ||||| || || | |||
Sbjct 124286 GAAGAACAGATCACGTGCACGCACTTCCTCCTTTCCGTGGTTCTTGCGGAGGTCCATGAA 124227
Query 63362 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTT 63421
| || | ||| | ||||| || || | ||| ||||| | | ||||| || |||||
Sbjct 124226 GGAGATGACATCTGCGTGCCATGGCTCTAGGTAGATGGCGAACGCGCCAGGACGCTTGTT 124167
Query 63422 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63481
|| || || || | || | || |||||||| || || | |||||| || || | |||
Sbjct 124166 GCCACCTTGGTCGACATAGCGGGCAGTGTTATTGTAGACGCGCAACATCGGGATGAGACC 124107
Query 63482 GTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGA 63541
|| ||| | || || || || | || || |||| | ||||| || || | |
Sbjct 124106 ATTGGATGTGCCGTTTGTGCCTGCAATGTATGATCCAGTAGCACGGATCTT-GTGGCAGT 124048
Query 63542 T-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGA 63600
| || || || || || || | || ||||| | ||||| || | ||||| ||||
Sbjct 124047 TCAGGCCAATACCACCAGCATTCTTCGAGATCATGGCGCAAGTCTTCAGTGTGTCGTAGA 123988
Query 63601 TGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAG 63660
| || || ||||| ||||| |||||| | | || || || || || | |
Sbjct 123987 TACCCTCAATGCTGTCATCCTTCATGTCGATCAAGAAGCATGAAGCCAACTGTGCATTCG 123928
Query 63661 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTT-TTCAGAAAGTAGA 63719
|| || || | || | ||||| |||||||| || || |||| ||| | ||||
Sbjct 123927 GCGTACCAGCGCTGAACAGTGTAGGCGAAGCGTGTGTGAAGTATTTGTTCGACATGTAG- 123869
Query 63720 TTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATT 63779
||||| |||||||| || | || ||||| || ||||| || || ||||||||
Sbjct 123868 TTGTAGGTCTCAATGGCGGCCTCGATATCGTCGCCGTGGATTCCAACAGCCACACGCATG 123809
Query 63780 AACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCC 63839
| ||||||||| ||||| || ||| |||| | || | |||||| || ||||
Sbjct 123808 ATCATGTGCTGTGGTCTCTCGGCAACTTTGCCATCAATGCGGAGCAAGTATGAGCGTTCC 123749
Query 63840 AAAGTTTTAAAACCAAAATAGTTGTA--TGAAA 63870
| || || |||||||| || | ||| |||||
Sbjct 123748 AGCGTCTTGAAACCAAAGTATTGGTAGTTGAAA 123716
>seq680
Length=821847
Score = 120 bits (132), Expect = 4e-22
Identities = 368/566 (65%), Gaps = 6/566 (1%)
Strand=Plus/Minus
Query 33573 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAA 33632
|||| || || ||||| || ||||| |||||||| | || | ||||| ||
Sbjct 340871 AACAGCAGGCAAGCGAAGTCAGTGTGCATGCCCTCGTCACGGGAGATGAGCTCGTTGGAG 340812
Query 33633 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG 33692
|| ||||| || | ||| || |||||||| || | ||| || ||||| |||||||| |||
Sbjct 340811 AAGGTGAGGCCAGCCATGAGACCACGCTTCTTCAACCAGAAGATGGACGCGAATGAGCCG 340752
Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTC-TCTCCATA--ACCGGCG 33749
|| |||||||| || || || ||||||||||| || | || | | | | | | | |
Sbjct 340751 GAGAAGAAGATACCCTCGACAGCAGCAAAGGCGATCAATCGCATAGCGAAAGTAGAGTCC 340692
Query 33750 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 33809
|||| ||||| | ||||| || ||||| | | |||||| || | ||
Sbjct 340691 TTGTCCGAGATCCATCGCAGTGCCCAGTCAGCCTTTCTGCGGATACAAGGGATGTTGTCG 340632
Query 33810 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 33869
||||| || ||||| || || | || || | | || || ||||| | ||
Sbjct 340631 ATGGCGTTGAAGAGGTATGTTCGCTGCTTGGGCTCGCTGATGTATGTGTCGATGAGGAGG 340572
Query 33870 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 33929
|| | || || || ||||| || || ||||| || |||||||| |||| |||
Sbjct 340571 GAGTATGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGTGCC 340512
Query 33930 TCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCA 33989
|| | || ||||| || | | ||||| || | | || || || || || || ||
Sbjct 340511 TCCGGTATTTGCACCTCGGCGCTGAATCGCTCGACCAGGTTCTCGTTGACAATGCCGTCG 340452
Query 33990 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGT--- 34046
|| || || || || | || ||| || || | ||||| | |||
Sbjct 340451 GATGCGGCGAAGAATGCAAGGACGTGTGAGATGAAGAAGCGCTCGTCGTCATTGAGTCGC 340392
Query 34047 TTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCC 34106
|| ||||| || | || ||| || || | ||| | ||||| | ||||| |||||||||
Sbjct 340391 TTGTTCCAGTCGTGGAGATCCTTGGACAGATCAATCTCTTCGGCAGTCCAGAATGATGCC 340332
Query 34107 TCTGCCTTTTTATACATATTCCAGAT 34132
|| ||||| || ||||| ||||| ||
Sbjct 340331 TCGGCCTTCTTGTACATGTTCCATAT 340306
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629802287559600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |