Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercospora_20cf._20sigesbeckiae_20[genbank_20GCA_5F002217505.1_20201 7-07-13] 1,945 sequences; 34,940,764 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq411 188 9e-43 seq680 120 4e-22 >seq411 Length=240905 Score = 188 bits (208), Expect = 9e-43 Identities = 607/933 (65%), Gaps = 8/933 (1%) Strand=Plus/Minus Query 62943 GCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCA 63002 |||| |||||| || || |||||||| ||||| | | | | || | || |||||| Sbjct 124645 GCAAGAGATGCAAGGTTGCACACGGCGACCTCGTCTGGTGCGGTGTACTCAATGATCTCA 124586 Query 63003 GTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 63062 ||||| | || || |||||| ||||| | || | || || ||||| ||| Sbjct 124585 GTGCACAAGTTGGAACTCTTGATCGTTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCA 124526 Query 63063 GCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 63122 |||||||| || || ||||| || |||||| ||| |||| | ||| | || || | | Sbjct 124525 GCATCCTTGTAGAGCATGAAAGGTCCACCAGTCTCAGTCTGGGCTTCCAAGATAGCATAC 124466 Query 63123 CAGACGACTCGAGCCTTTATTATAG-ATTTGTATCTCCTTTCTCTTTCGTATAGAGTATA 63181 ||||| | |||| | | | | | |||| |||| ||||| | || || Sbjct 124465 CAGACCTTTTGAGCGCGGACAGTCTCACGTCCACGACCTT-CTCTCTCGTAGCGGGTGTA 124407 Query 63182 CAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACAT 63241 || ||||||||||| || | |||| | | | ||| || |||| || ||||| Sbjct 124406 CAGCTCCTCGAACTCGTCACCGTACACATCAGCGAGACCAGGGCACTCATTGGGGCACAT 124347 Query 63242 CAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC 63301 | | ||| ||| ||| | | || || ||||| || ||||| || ||||||||||| Sbjct 124346 GAGTGTCCATTCTGCGTTGGCTTCGACACGCTTCATGAACAGATCTGGGATCCAAAGAGC 124287 Query 63302 TATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 63361 | || ||||| | || | |||||| ||||| ||||| || || | ||| Sbjct 124286 GAAGAACAGATCACGTGCACGCACTTCCTCCTTTCCGTGGTTCTTGCGGAGGTCCATGAA 124227 Query 63362 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTT 63421 | || | ||| | ||||| || || | ||| ||||| | | ||||| || ||||| Sbjct 124226 GGAGATGACATCTGCGTGCCATGGCTCTAGGTAGATGGCGAACGCGCCAGGACGCTTGTT 124167 Query 63422 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63481 || || || || | || | || |||||||| || || | |||||| || || | ||| Sbjct 124166 GCCACCTTGGTCGACATAGCGGGCAGTGTTATTGTAGACGCGCAACATCGGGATGAGACC 124107 Query 63482 GTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGA 63541 || ||| | || || || || | || || |||| | ||||| || || | | Sbjct 124106 ATTGGATGTGCCGTTTGTGCCTGCAATGTATGATCCAGTAGCACGGATCTT-GTGGCAGT 124048 Query 63542 T-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGA 63600 | || || || || || || | || ||||| | ||||| || | ||||| |||| Sbjct 124047 TCAGGCCAATACCACCAGCATTCTTCGAGATCATGGCGCAAGTCTTCAGTGTGTCGTAGA 123988 Query 63601 TGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAG 63660 | || || ||||| ||||| |||||| | | || || || || || | | Sbjct 123987 TACCCTCAATGCTGTCATCCTTCATGTCGATCAAGAAGCATGAAGCCAACTGTGCATTCG 123928 Query 63661 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTT-TTCAGAAAGTAGA 63719 || || || | || | ||||| |||||||| || || |||| ||| | |||| Sbjct 123927 GCGTACCAGCGCTGAACAGTGTAGGCGAAGCGTGTGTGAAGTATTTGTTCGACATGTAG- 123869 Query 63720 TTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATT 63779 ||||| |||||||| || | || ||||| || ||||| || || |||||||| Sbjct 123868 TTGTAGGTCTCAATGGCGGCCTCGATATCGTCGCCGTGGATTCCAACAGCCACACGCATG 123809 Query 63780 AACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCC 63839 | ||||||||| ||||| || ||| |||| | || | |||||| || |||| Sbjct 123808 ATCATGTGCTGTGGTCTCTCGGCAACTTTGCCATCAATGCGGAGCAAGTATGAGCGTTCC 123749 Query 63840 AAAGTTTTAAAACCAAAATAGTTGTA--TGAAA 63870 | || || |||||||| || | ||| ||||| Sbjct 123748 AGCGTCTTGAAACCAAAGTATTGGTAGTTGAAA 123716 >seq680 Length=821847 Score = 120 bits (132), Expect = 4e-22 Identities = 368/566 (65%), Gaps = 6/566 (1%) Strand=Plus/Minus Query 33573 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAA 33632 |||| || || ||||| || ||||| |||||||| | || | ||||| || Sbjct 340871 AACAGCAGGCAAGCGAAGTCAGTGTGCATGCCCTCGTCACGGGAGATGAGCTCGTTGGAG 340812 Query 33633 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG 33692 || ||||| || | ||| || |||||||| || | ||| || ||||| |||||||| ||| Sbjct 340811 AAGGTGAGGCCAGCCATGAGACCACGCTTCTTCAACCAGAAGATGGACGCGAATGAGCCG 340752 Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTC-TCTCCATA--ACCGGCG 33749 || |||||||| || || || ||||||||||| || | || | | | | | | | | Sbjct 340751 GAGAAGAAGATACCCTCGACAGCAGCAAAGGCGATCAATCGCATAGCGAAAGTAGAGTCC 340692 Query 33750 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 33809 |||| ||||| | ||||| || ||||| | | |||||| || | || Sbjct 340691 TTGTCCGAGATCCATCGCAGTGCCCAGTCAGCCTTTCTGCGGATACAAGGGATGTTGTCG 340632 Query 33810 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 33869 ||||| || ||||| || || | || || | | || || ||||| | || Sbjct 340631 ATGGCGTTGAAGAGGTATGTTCGCTGCTTGGGCTCGCTGATGTATGTGTCGATGAGGAGG 340572 Query 33870 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 33929 || | || || || ||||| || || ||||| || |||||||| |||| ||| Sbjct 340571 GAGTATGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGTGCC 340512 Query 33930 TCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCA 33989 || | || ||||| || | | ||||| || | | || || || || || || || Sbjct 340511 TCCGGTATTTGCACCTCGGCGCTGAATCGCTCGACCAGGTTCTCGTTGACAATGCCGTCG 340452 Query 33990 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGT--- 34046 || || || || || | || ||| || || | ||||| | ||| Sbjct 340451 GATGCGGCGAAGAATGCAAGGACGTGTGAGATGAAGAAGCGCTCGTCGTCATTGAGTCGC 340392 Query 34047 TTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCC 34106 || ||||| || | || ||| || || | ||| | ||||| | ||||| ||||||||| Sbjct 340391 TTGTTCCAGTCGTGGAGATCCTTGGACAGATCAATCTCTTCGGCAGTCCAGAATGATGCC 340332 Query 34107 TCTGCCTTTTTATACATATTCCAGAT 34132 || ||||| || ||||| ||||| || Sbjct 340331 TCGGCCTTCTTGTACATGTTCCATAT 340306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629802287559600