Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cercospora_20cf._20sigesbeckiae_20[genbank_20GCA_5F002217505.1_20201
7-07-13] 1,945 sequences; 34,940,764 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq680 104 2e-17
seq455 87.8 2e-12
>seq680
Length=821847
Score = 104 bits (114), Expect = 2e-17
Identities = 352/538 (65%), Gaps = 19/538 (4%)
Strand=Plus/Plus
Query 52532 TCAACGCTTTTGACAATGTTCCGTGTGTGCGCAAAAAGGATGATTGGGCATTGAAATGGA 52591
||||||| | ||||| | || ||| | |||| ||||| ||| |||||| || |||||
Sbjct 340622 TCAACGCCATCGACAACATCCCTTGTATCCGCAGAAAGGCTGACTGGGCACTGCGATGGA 340681
Query 52592 TC---GAAAACGACAAAGCCACTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAG 52648
|| || || ||| | ||||| || || || |||| |||||| || || |
Sbjct 340682 TCTCGGACAAGGACT---CTACTTTCGCTATGCGATTGATCGCCTTTGCTGCTGTCGAGG 340738
Query 52649 GTGTGtttttttCGGGTAGTTTTGCGGCAATATTTTACATCAA-AACCTTGGGCATAATG 52707
|| | || || || || || ||| | || || | | || || | ||| | | |||
Sbjct 340739 GTATCTTCTTCTCCGGCTCATTCGCGTCCATCTTCTGGTTGAAGAAGCGTGGTC-TCATG 340797
Query 52708 CCCGGCCTCACGTTTAGCAACGAGTTGATATCGCGCGACGAAGGAATGCACACAGATTTT 52767
| |||||||| || ||||||| | || || || ||||| || |||||||| || ||
Sbjct 340798 GCTGGCCTCACCTTCTCCAACGAGCTCATCTCCCGTGACGAGGGCATGCACACTGACTTC 340857
Query 52768 GCGTGTTTG-TATTATAATACGCGCGTTAAAGAAAAATT--GTCATATGAAAAAATTCTA 52824
|| || || | || | || | ||||| || | || | | | |
Sbjct 340858 GCTTGCCTGCTGTTCTCTCACC-----TCAAGAACAAGCCCGCCAAGTCGGTCG-TGCAA 340911
Query 52825 GACATGTTTAAAGAGGCCGTCGACATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTA 52884
||| | |||||||| | |||||| |||| || || || || ||| | ||
Sbjct 340912 AGCATCATCGTGGAGGCCGTTGCCATTGAGCAAGAATTCTTGACCGATGCTCTGCCTTGC 340971
Query 52885 TCATTGTTGGGCATGAACGCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGA 52944
| || | ||||||||||| | | |||||| ||||||| |||||||| || ||| ||
Sbjct 340972 GCGCTGCTCGGCATGAACGCTAAGCTCATGTGCCAGTACATTGAGTTTGTCGCTGACCGA 341031
Query 52945 CTGTTGATGCAGCTCGGTCAGCCGAAA-TACTATAATGCGCGTAACCCCTTTTCGTTTAT 53003
||| || | || || || || ||| | ||| || || |||||||| || ||
Sbjct 341032 CTGCTGCTCGCTCTTGG-CAACCAAAAGTTCTACAACGCCACCAACCCCTTCGACTTCAT 341090
Query 53004 GAACAACATATCGCTCGAGGGCAAAACAAACTTTTTCGAGAGACGTGTGGGCGAGTAC 53061
| | ||||| || |||| ||||| || ||||| ||||||| ||||| ||||| |||
Sbjct 341091 GGAGAACATCTCTCTCGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGCGACTAC 341148
>seq455
Length=1194790
Score = 87.8 bits (96), Expect = 2e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| ||||||| ||| | || ||||| | || || || ||||| ||||| || ||
Sbjct 1130761 CCACCTCGTAGACGAAGCACCAAGTGGAGAGTCGATTCCTTTTGGATGTTGTAGTCCGAG 1130820
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| |||| ||||||||| || || || || |||||| || ||||| || || ||
Sbjct 1130821 AGAGTGCGGCCGTCTTCGAGTTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGTGGG 1130880
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717
||||| || ||||| ||| || || | | || | |||||| | | ||| |||
Sbjct 1130881 ATGCCCTCCTTGTCTTGGATCTTGGACTTGACATTGTCGATAGTGTCGCTCGACTCGACC 1130940
Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
|||| || | ||||||||||| | || || ||||| || ||||||
Sbjct 1130941 TCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATA 1130988
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496051939444000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |