Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercospora_20cf._20sigesbeckiae_20[genbank_20GCA_5F002217505.1_20201 7-07-13] 1,945 sequences; 34,940,764 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq680 104 2e-17 seq455 87.8 2e-12 >seq680 Length=821847 Score = 104 bits (114), Expect = 2e-17 Identities = 352/538 (65%), Gaps = 19/538 (4%) Strand=Plus/Plus Query 52532 TCAACGCTTTTGACAATGTTCCGTGTGTGCGCAAAAAGGATGATTGGGCATTGAAATGGA 52591 ||||||| | ||||| | || ||| | |||| ||||| ||| |||||| || ||||| Sbjct 340622 TCAACGCCATCGACAACATCCCTTGTATCCGCAGAAAGGCTGACTGGGCACTGCGATGGA 340681 Query 52592 TC---GAAAACGACAAAGCCACTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAG 52648 || || || ||| | ||||| || || || |||| |||||| || || | Sbjct 340682 TCTCGGACAAGGACT---CTACTTTCGCTATGCGATTGATCGCCTTTGCTGCTGTCGAGG 340738 Query 52649 GTGTGtttttttCGGGTAGTTTTGCGGCAATATTTTACATCAA-AACCTTGGGCATAATG 52707 || | || || || || || ||| | || || | | || || | ||| | | ||| Sbjct 340739 GTATCTTCTTCTCCGGCTCATTCGCGTCCATCTTCTGGTTGAAGAAGCGTGGTC-TCATG 340797 Query 52708 CCCGGCCTCACGTTTAGCAACGAGTTGATATCGCGCGACGAAGGAATGCACACAGATTTT 52767 | |||||||| || ||||||| | || || || ||||| || |||||||| || || Sbjct 340798 GCTGGCCTCACCTTCTCCAACGAGCTCATCTCCCGTGACGAGGGCATGCACACTGACTTC 340857 Query 52768 GCGTGTTTG-TATTATAATACGCGCGTTAAAGAAAAATT--GTCATATGAAAAAATTCTA 52824 || || || | || | || | ||||| || | || | | | | Sbjct 340858 GCTTGCCTGCTGTTCTCTCACC-----TCAAGAACAAGCCCGCCAAGTCGGTCG-TGCAA 340911 Query 52825 GACATGTTTAAAGAGGCCGTCGACATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTA 52884 ||| | |||||||| | |||||| |||| || || || || ||| | || Sbjct 340912 AGCATCATCGTGGAGGCCGTTGCCATTGAGCAAGAATTCTTGACCGATGCTCTGCCTTGC 340971 Query 52885 TCATTGTTGGGCATGAACGCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGA 52944 | || | ||||||||||| | | |||||| ||||||| |||||||| || ||| || Sbjct 340972 GCGCTGCTCGGCATGAACGCTAAGCTCATGTGCCAGTACATTGAGTTTGTCGCTGACCGA 341031 Query 52945 CTGTTGATGCAGCTCGGTCAGCCGAAA-TACTATAATGCGCGTAACCCCTTTTCGTTTAT 53003 ||| || | || || || || ||| | ||| || || |||||||| || || Sbjct 341032 CTGCTGCTCGCTCTTGG-CAACCAAAAGTTCTACAACGCCACCAACCCCTTCGACTTCAT 341090 Query 53004 GAACAACATATCGCTCGAGGGCAAAACAAACTTTTTCGAGAGACGTGTGGGCGAGTAC 53061 | | ||||| || |||| ||||| || ||||| ||||||| ||||| ||||| ||| Sbjct 341091 GGAGAACATCTCTCTCGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGCGACTAC 341148 >seq455 Length=1194790 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||||| ||| | || ||||| | || || || ||||| ||||| || || Sbjct 1130761 CCACCTCGTAGACGAAGCACCAAGTGGAGAGTCGATTCCTTTTGGATGTTGTAGTCCGAG 1130820 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||||||| || || || || |||||| || ||||| || || || Sbjct 1130821 AGAGTGCGGCCGTCTTCGAGTTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGTGGG 1130880 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||| || ||||| ||| || || | | || | |||||| | | ||| ||| Sbjct 1130881 ATGCCCTCCTTGTCTTGGATCTTGGACTTGACATTGTCGATAGTGTCGCTCGACTCGACC 1130940 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| || | ||||||||||| | || || ||||| || |||||| Sbjct 1130941 TCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATA 1130988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496051939444000