Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercospora_20cf._20sigesbeckiae_20[genbank_20GCA_5F002217505.1_20201 7-07-13] 1,945 sequences; 34,940,764 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq411 174 2e-38 >seq411 Length=240905 Score = 174 bits (192), Expect = 2e-38 Identities = 624/961 (65%), Gaps = 20/961 (2%) Strand=Plus/Minus Query 79620 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCA 79679 |||||| || || || ||||| ||||| | | | | || | || || |||||||| Sbjct 124640 AGATGCAAGGTTGCACACGGCGACCTCGTCTGGTGCGGTGTACTCAATGATCTCAGTGCA 124581 Query 79680 GAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 79739 | ||| || ||| || ||||| | || | || || ||||| ||| ||||| Sbjct 124580 CAAGTTGGAACTCTTGATCGTTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATC 124521 Query 79740 CTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 79799 ||| || || ||||| || |||||| ||| |||| | ||| | || || | |||||| Sbjct 124520 CTTGTAGAGCATGAAAGGTCCACCAGTCTCAGTCTGGGCTTCCAAGATAGCATACCAGAC 124461 Query 79800 GACTCGAGCCTTTATTATAG-ACTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATC 79858 | |||| | | || | | | || |||| ||||| | || || | Sbjct 124460 CTTTTGAGCGCGGACAGTCTCACGTCCACGACCTT-CTCTCTCGTAGCGGGTGTACAGCT 124402 Query 79859 GTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACG 79918 ||||||||||| || | ||||| | | ||||| || || | || ||||| | | Sbjct 124401 CCTCGAACTCGTCACCGTACACATCAGCGAGACCAGGGCACTCATTGGGGCACATGAGTG 124342 Query 79919 ACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAA 79978 ||| ||| | | | | || || ||||| || ||||| || ||||||||||| | | Sbjct 124341 TCCATTCTGCGTTGGCTTCGACACGCTTCATGAACAGATCTGGGATCCAAAGAGCGAAGA 124282 Query 79979 ATAGATCTCTGGTTCTATGC---TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACG 80035 | ||||| | || | | || ||||| ||||| ||||| || || | ||| | Sbjct 124281 ACAGATCAC--GTGC-ACGCACTTCCTCCTTTCCGTGGTTCTTGCGGAGGTCCATGAAGG 124225 Query 80036 CCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTC 80095 || | ||| | ||||| || || | ||| ||||| | | || || || ||||| | Sbjct 124224 AGATGACATCTGCGTGCCATGGCTCTAGGTAGATGGCGAACGCGCCAGGACGCTTGTTGC 124165 Query 80096 CTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCAT 80155 | || || || | || | || |||||||| || || | |||||| || || | ||||| Sbjct 124164 CACCTTGGTCGACATAGCGGGCAGTGTTATTGTAGACGCGCAACATCGGGATGAGACCAT 124105 Query 80156 TGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT- 80214 ||||||| || || || || | || || |||| | ||||| || || | | | Sbjct 124104 TGGATGTGCCGTTTGTGCCTGCAATGTATGATCCAGTAGCACGGATCTT-GTGGCAGTTC 124046 Query 80215 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 80274 || || || || || || | || ||||| | ||||| || | || || ||||| Sbjct 124045 AGGCCAATACCACCAGCATTCTTCGAGATCATGGCGCAAGTCTTCAGTGTGTCGTAGATA 123986 Query 80275 CCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACA--TTTGGTGACGAC 80332 ||||| ||||| ||||| |||||| | | || || || || | || || | Sbjct 123985 CCCTCAATGCTGTCATCCTTCATGTCGATCAAGAAGCATGAAGCCAACTGTGCATTCGGC 123926 Query 80333 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACA-GTAGA 80391 || || || | || | ||||| |||||||| || || |||| | |||| |||| Sbjct 123925 --GTACCAGCGCTGAACAGTGTAGGCGAAGCGTGTGTGAAGTATTTGTTCGACATGTAG- 123869 Query 80392 TTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATT 80451 ||||| |||||||| || | || ||||| || ||||| || || |||||||| Sbjct 123868 TTGTAGGTCTCAATGGCGGCCTCGATATCGTCGCCGTGGATTCCAACAGCCACACGCATG 123809 Query 80452 AACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCC 80511 | ||||||||| ||||| || | | ||| || || | |||||| || |||| Sbjct 123808 ATCATGTGCTGTGGTCTCTCGGCAACTTTGCCATCAATGCGGAGCAAGTATGAGCGTTCC 123749 Query 80512 AAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACCGAGT 80569 | || || |||||||| || | ||| ||||| |||| || || | ||| | |||| Sbjct 123748 AGCGTCTTGAAACCAAAGTATTGGTAGTTGAAA--TCTCTGTCATAGACAATGGCAGAGT 123691 Query 80570 T 80570 | Sbjct 123690 T 123690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718251337089800