Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cercospora_20cf._20sigesbeckiae_20[genbank_20GCA_5F002217505.1_20201
7-07-13] 1,945 sequences; 34,940,764 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq411 176 6e-39
>seq411
Length=240905
Score = 176 bits (194), Expect = 6e-39
Identities = 612/942 (65%), Gaps = 26/942 (3%)
Strand=Plus/Minus
Query 71698 GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCA 71757
|||| |||||| || || || ||||| ||||| | | ||| || | || || |||
Sbjct 124645 GCAAGAGATGCAAGGTTGCACACGGCGACCTCGTCTGGTGCGGTGTACTCAATGATCTCA 124586
Query 71758 GTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 71817
||||| | || || |||||| ||||| | || | || || ||||| |||
Sbjct 124585 GTGCACAAGTTGGAACTCTTGATCGTTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCA 124526
Query 71818 GCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 71877
|||||||| || || || || || |||||| ||| |||| | ||| | || || | |
Sbjct 124525 GCATCCTTGTAGAGCATGAAAGGTCCACCAGTCTCAGTCTGGGCTTCCAAGATAGCATAC 124466
Query 71878 CAGACGACTCGAGC-----CTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTATTGTG 71932
||||| | |||| | | | | | | | | || ||||| ||||| | |
Sbjct 124465 CAGACCTTTTGAGCGCGGACAGTCTCACGTCCACG-ACCT----TCTCTCTCGTAGCGGG 124411
Query 71933 TATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGAC 71992
| || | ||||||||||| || | ||| | | ||||| || ||||| || |
Sbjct 124410 TGTACAGCTCCTCGAACTCGTCACCGTACACATCAGCGAGACCAGGGCACTCATTGGGGC 124351
Query 71993 ACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAA 72052
|||| | || ||| ||| | | | | || || ||||| || ||||| || |||||||
Sbjct 124350 ACATGAGTGTCCATTCTGCGTTGGCTTCGACACGCTTCATGAACAGATCTGGGATCCAAA 124291
Query 72053 GAGCTATAAATAGATCTCTGGTTCTATGC---TCCTCGTTTCCTGTATTCTTTTTAAGAT 72109
|||| | || ||||| | || | | || ||||| ||||| ||||| || |
Sbjct 124290 GAGCGAAGAACAGATCAC--GTGC-ACGCACTTCCTCCTTTCCGTGGTTCTTGCGGAGGT 124234
Query 72110 CGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCC 72169
| | ||| | || | ||| | ||||| || || | ||| ||||| | | || || |
Sbjct 124233 CCATGAAGGAGATGACATCTGCGTGCCATGGCTCTAGGTAGATGGCGAACGCGCCAGGAC 124174
Query 72170 GTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAA 72229
| ||||| || || || || | || | || |||||||| || || | |||||| || |
Sbjct 124173 GCTTGTTGCCACCTTGGTCGACATAGCGGGCAGTGTTATTGTAGACGCGCAACATCGGGA 124114
Query 72230 TAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGC 72289
| | ||||||||||| || || || || | || || |||| | ||||| || |||
Sbjct 124113 TGAGACCATTGGATGTGCCGTTTGTGCCTGCAATGTATGATCCAGTAGCACGGATCTTG- 124055
Query 72290 TAATTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTA 72348
| | | || || || || || || | || ||||| | ||||| || | ||
Sbjct 124054 TGGCAGTTCAGGCCAATACCACCAGCATTCTTCGAGATCATGGCGCAAGTCTTCAGTGTG 123995
Query 72349 TCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACA--TTT 72406
|| ||||| ||||| || || |||||| |||||| | | || || || || | |
Sbjct 123994 TCGTAGATACCCTCAATGCTGTCATCCTTCATGTCGATCAAGAAGCATGAAGCCAACTGT 123935
Query 72407 GGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAG 72466
| || | || || || | || | ||||| |||||||| || || |||| | |
Sbjct 123934 GCATTCGGC--GTACCAGCGCTGAACAGTGTAGGCGAAGCGTGTGTGAAGTATTTGTTCG 123877
Query 72467 ACA-GTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCG 72525
||| |||| ||||| |||||||| || | || ||||| || ||||| || ||
Sbjct 123876 ACATGTAG-TTGTAGGTCTCAATGGCGGCCTCGATATCGTCGCCGTGGATTCCAACAGCC 123818
Query 72526 ACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAG 72585
|||||||| | ||| ||||| ||||| || | | ||| || || | ||||||
Sbjct 123817 ACACGCATGATCATGTGCTGTGGTCTCTCGGCAACTTTGCCATCAATGCGGAGCAAGTAT 123758
Query 72586 GATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAA 72625
|| ||||| || || |||||||| || | ||| |||||
Sbjct 123757 GAGCGTTCCAGCGTCTTGAAACCAAAGTATTGGTAGTTGAAA 123716
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671122882928200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |