Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercospora_20cf._20sigesbeckiae_20[genbank_20GCA_5F002217505.1_20201 7-07-13] 1,945 sequences; 34,940,764 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq411 176 6e-39 >seq411 Length=240905 Score = 176 bits (194), Expect = 6e-39 Identities = 612/942 (65%), Gaps = 26/942 (3%) Strand=Plus/Minus Query 71698 GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCA 71757 |||| |||||| || || || ||||| ||||| | | ||| || | || || ||| Sbjct 124645 GCAAGAGATGCAAGGTTGCACACGGCGACCTCGTCTGGTGCGGTGTACTCAATGATCTCA 124586 Query 71758 GTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 71817 ||||| | || || |||||| ||||| | || | || || ||||| ||| Sbjct 124585 GTGCACAAGTTGGAACTCTTGATCGTTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCA 124526 Query 71818 GCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 71877 |||||||| || || || || || |||||| ||| |||| | ||| | || || | | Sbjct 124525 GCATCCTTGTAGAGCATGAAAGGTCCACCAGTCTCAGTCTGGGCTTCCAAGATAGCATAC 124466 Query 71878 CAGACGACTCGAGC-----CTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTATTGTG 71932 ||||| | |||| | | | | | | | | || ||||| ||||| | | Sbjct 124465 CAGACCTTTTGAGCGCGGACAGTCTCACGTCCACG-ACCT----TCTCTCTCGTAGCGGG 124411 Query 71933 TATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGAC 71992 | || | ||||||||||| || | ||| | | ||||| || ||||| || | Sbjct 124410 TGTACAGCTCCTCGAACTCGTCACCGTACACATCAGCGAGACCAGGGCACTCATTGGGGC 124351 Query 71993 ACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAA 72052 |||| | || ||| ||| | | | | || || ||||| || ||||| || ||||||| Sbjct 124350 ACATGAGTGTCCATTCTGCGTTGGCTTCGACACGCTTCATGAACAGATCTGGGATCCAAA 124291 Query 72053 GAGCTATAAATAGATCTCTGGTTCTATGC---TCCTCGTTTCCTGTATTCTTTTTAAGAT 72109 |||| | || ||||| | || | | || ||||| ||||| ||||| || | Sbjct 124290 GAGCGAAGAACAGATCAC--GTGC-ACGCACTTCCTCCTTTCCGTGGTTCTTGCGGAGGT 124234 Query 72110 CGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCC 72169 | | ||| | || | ||| | ||||| || || | ||| ||||| | | || || | Sbjct 124233 CCATGAAGGAGATGACATCTGCGTGCCATGGCTCTAGGTAGATGGCGAACGCGCCAGGAC 124174 Query 72170 GTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAA 72229 | ||||| || || || || | || | || |||||||| || || | |||||| || | Sbjct 124173 GCTTGTTGCCACCTTGGTCGACATAGCGGGCAGTGTTATTGTAGACGCGCAACATCGGGA 124114 Query 72230 TAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGC 72289 | | ||||||||||| || || || || | || || |||| | ||||| || ||| Sbjct 124113 TGAGACCATTGGATGTGCCGTTTGTGCCTGCAATGTATGATCCAGTAGCACGGATCTTG- 124055 Query 72290 TAATTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTA 72348 | | | || || || || || || | || ||||| | ||||| || | || Sbjct 124054 TGGCAGTTCAGGCCAATACCACCAGCATTCTTCGAGATCATGGCGCAAGTCTTCAGTGTG 123995 Query 72349 TCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACA--TTT 72406 || ||||| ||||| || || |||||| |||||| | | || || || || | | Sbjct 123994 TCGTAGATACCCTCAATGCTGTCATCCTTCATGTCGATCAAGAAGCATGAAGCCAACTGT 123935 Query 72407 GGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAG 72466 | || | || || || | || | ||||| |||||||| || || |||| | | Sbjct 123934 GCATTCGGC--GTACCAGCGCTGAACAGTGTAGGCGAAGCGTGTGTGAAGTATTTGTTCG 123877 Query 72467 ACA-GTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCG 72525 ||| |||| ||||| |||||||| || | || ||||| || ||||| || || Sbjct 123876 ACATGTAG-TTGTAGGTCTCAATGGCGGCCTCGATATCGTCGCCGTGGATTCCAACAGCC 123818 Query 72526 ACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAG 72585 |||||||| | ||| ||||| ||||| || | | ||| || || | |||||| Sbjct 123817 ACACGCATGATCATGTGCTGTGGTCTCTCGGCAACTTTGCCATCAATGCGGAGCAAGTAT 123758 Query 72586 GATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAA 72625 || ||||| || || |||||||| || | ||| ||||| Sbjct 123757 GAGCGTTCCAGCGTCTTGAAACCAAAGTATTGGTAGTTGAAA 123716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671122882928200