Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercospora_20cf._20sigesbeckiae_20[genbank_20GCA_5F002217505.1_20201 7-07-13] 1,945 sequences; 34,940,764 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq680 89.7 5e-13 seq455 82.4 8e-11 >seq680 Length=821847 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 50632 GAAGCCGTCGACATCGAAAAAGAGTTTTTCACGGACGCTTTACCCGTGGCATTGTTGGGC 50691 || ||||| | ||| || |||| || || || || ||| | || || || | ||| Sbjct 340924 GAGGCCGTTGCCATTGAGCAAGAATTCTTGACCGATGCTCTGCCTTGCGCGCTGCTCGGC 340983 Query 50692 ATGAACGCAGACATGATGTGCGAGTACATTGAGTTTGTTGCAGACAGATTGTTGTTGCAG 50751 |||||||| | | |||||| |||||||||||||||| || ||| || || || | Sbjct 340984 ATGAACGCTAAGCTCATGTGCCAGTACATTGAGTTTGTCGCTGACCGACTGCTGCTCGCT 341043 Query 50752 CTGGGACAACCGAAA-TACTATAATGCACGTAACCCCTTTCCGTTTATGAATAACATATC 50810 || || ||||| ||| | ||| || || |||||||| || ||| | ||||| || Sbjct 341044 CTTGG-CAACCAAAAGTTCTACAACGCCACCAACCCCTTCGACTTCATGGAGAACATCTC 341102 Query 50811 GTTGGAGGGCAAAACAAACTTTTTCGAAAGACGTGTAGGCGAATAC 50856 | | ||||| || ||||| ||||| | ||||| ||||| ||| Sbjct 341103 TCTCGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGCGACTAC 341148 >seq455 Length=1194790 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || ||||||| ||| | || || || | || ||||| ||||| |||||||| || Sbjct 1130761 CCACCTCGTAGACGAAGCACCAAGTGGAGAGTCGATTCCTTTTGGATGTTGTAGTCCGAG 1130820 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| |||||||||||| || || || |||||| || ||||| || || || Sbjct 1130821 AGAGTGCGGCCGTCTTCGAGTTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGTGGG 1130880 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 ||||| || ||||| || || || | | || | ||||| | | || || Sbjct 1130881 ATGCCCTCCTTGTCTTGGATCTTGGACTTGACATTGTCGATAGTGTCGCTCGACTCGACC 1130940 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||| ||| | ||||||||||| | || || ||||| || |||||| Sbjct 1130941 TCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATA 1130988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507002073212400