Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercospora_20cf._20sigesbeckiae_20[genbank_20GCA_5F002217505.1_20201 7-07-13] 1,945 sequences; 34,940,764 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq680 239 7e-58 seq411 127 3e-24 seq660 116 5e-21 >seq680 Length=821847 Score = 239 bits (264), Expect = 7e-58 Identities = 566/846 (67%), Gaps = 27/846 (3%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| | |||||||| ||||| |||| || || ||||| | ||||||| | |||||| Sbjct 340306 ATATGGAACATGTACAAGAAGGCCGAGGCATCATTCTGGACTGCCGAAGAGATTGATCTG 340365 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 |||||||| || |||| ||| | | || | | ||| ||||| || || || Sbjct 340366 TCCAAGGATCTCCACGACTGGAACAAGCGACTCAATGACGACGAGCGCTTCTTCATCTCA 340425 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198 ||| | | || ||||| |||| ||||| || || |||||||| || ||| | ||| Sbjct 340426 CACGTCCTTGCATTCTTCGCCGCATCCGACGGCATTGTCAACGAGAACCTGGTCGAGCGA 340485 Query 125199 TTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATT 125258 ||| ||| || || || |||| ||||| ||||| ||||| |||||||| Sbjct 340486 TTCAGCGCCGAGGTGCAAATACCGGAGGCACGATGCTTCTACGGCTTCCAGATCATGATG 340545 Query 125259 GAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC---G 125315 |||||| | ||||| || | ||||| || || |||| ||||| |||| || | Sbjct 340546 GAGAACATCCACTCCGAGACATACTCCCTCCTCATCGACACATACATCAGCGAGCCCAAG 340605 Query 125316 CAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCT 125375 || || |||| | ||||| ||||| ||||||| | || | ||| || | ||||||| Sbjct 340606 CAGCG--AACATA-CCTCTTCAACGCCATCGACAACATCCCTTGTATCCGCAGAAAGGCT 340662 Query 125376 CAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCA 125435 | |||| | || |||||| ||| | | ||| | | ||| || || | || Sbjct 340663 GACTGGGCACTGCGATGGATCTCGGACAAGGACTCTACTTTCGCTATGCGATTGATCGCC 340722 Query 125436 TTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAG 125495 || || || || ||||| |||||||| || || || ||| ||||||| ||| | ||| Sbjct 340723 TTTGCTGCTGTCGAGGGTATCTTCTTCTCCGGCTCATTCGCGTCCATCTTCTGGTTGAAG 340782 Query 125496 AAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGC 125555 ||||| || |||||| | || || || | |||||| | || || || ||||||||| Sbjct 340783 AAGCGTGGTCTCATGGCTGGCCTCACCTTCTCCAACGAGCTCATCTCCCGTGACGAGGGC 340842 Query 125556 CTACACTGTGACTTTGCCATTCTACTGTT-TCGCAACT--ATCTGCGTCCCGAGTGCAGA 125612 | ||| |||||| || || ||||| || || || | |||| || Sbjct 340843 ATGCACACTGACTTCGCTTGCCTGCTGTTCTCTCACCTCAAGAACAAGCCCG---CCAAG 340899 Query 125613 TCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTT 125672 || || || |||| ||||| | | | ||| |||| || || ||||| || Sbjct 340900 TCGGTCG-TGCAAAG--CATCATCGTGGAGGCCGTTGCC------ATTGAGCAAGAATTC 340950 Query 125673 CTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTAC 125732 | ||||| | || || | || | ||||||||| ||||| |||||| ||||| Sbjct 340951 TTGACCGATGCTCTGCCTTGCGCGCTGCTCGGCATGAACGCTAAGCTCATGTGCCAGTAC 341010 Query 125733 ATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGG---CCGCAAGATTTACAAC 125789 || |||||||| || || || || ||| || |||| || ||| | |||||| Sbjct 341011 ATTGAGTTTGTCGCTGACCGACTGCTGCTCG---CTCTTGGCAACCAAAAGTTCTACAAC 341067 Query 125790 GCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTC 125849 |||| || ||||| || |||||| | ||| || || | || ||||||||||| ||| Sbjct 341068 GCCACCAACCCCTTCGACTTCATGGAGAACATCTCTCTCGGCGGCAAGACCAACTTCTTC 341127 Query 125850 GAGAAG 125855 |||||| Sbjct 341128 GAGAAG 341133 >seq411 Length=240905 Score = 127 bits (140), Expect = 3e-24 Identities = 363/553 (66%), Gaps = 4/553 (1%) Strand=Plus/Plus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATG-CAATGTCACG 96865 |||||||||| ||| ||| || | || ||| | | | |||||| || || | || Sbjct 124089 ACAAACGGCACATCCAATGGTCTCATCCCGATGTTGCGCGTCTACAATAACACTGCC-CG 124147 Query 96866 ATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTG 96925 || || || || ||||| || || || ||||| | ||| ||||| | || || || Sbjct 124148 CTATGTCGACCAAGGTGGCAACAAGCGTCCTGGCGCGTTCGCCATCTACCTAGAGCCATG 124207 Query 96926 GCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACG 96985 |||||| || || | ||| || || | ||||| ||| || || || | || Sbjct 124208 GCACGCAGATGTCATCTCCTTCATGGACCTCCGCAAGAACCACGGAAAGGAGGAAGTGCG 124267 Query 96986 AGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGA 97045 || | || |||| | || || ||| | |||||| ||||||||||||| ||| | | Sbjct 124268 TGCACGTGATCTGTTCTTCGCTCTTTGGATCCCAGATCTGTTCATGAAGCGTGTCGAAGC 124327 Query 97046 CGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGG 97105 | | | |||| || ||||||||| | || || ||||| | ||| | || Sbjct 124328 CAACGCAGAATGGACACTCATGTGCCCCAATGAGTGCCCTGGTCTCGCTGATGTGTACGG 124387 Query 97106 CGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGAT-ACGTGAGACGAG 97164 || ||||| |||| |||||| ||||||| ||| || || ||||||||| | Sbjct 124388 TGACGAGTTCGAGGAGCTGTACACCCGCTACGAGAGAGAAGGTCGTGGACGTGAGACT-G 124446 Query 97165 TCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGT 97224 || || | | | | ||| | || ||| || || ||| |||||||| || | Sbjct 124447 TCCGCGCTCAAAAGGTCTGGTATGCTATCTTGGAAGCCCAGACTGAGACTGGTGGACCTT 124506 Query 97225 ACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCA 97284 ||| |||||||||||| | | || ||||| |||||||| || | || || |||| Sbjct 124507 TCATGCTCTACAAGGATGCTGCCAACCGCAAGAGCAACCAGAAGAACCTCGGAACGATCA 124566 Query 97285 AGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTT 97344 || | ||||| ||||||| || || | |||||| || | || |||||| || || | Sbjct 124567 AGAGTTCCAACTTGTGCACTGAGATCATTGAGTACACCGCACCAGACGAGGTCGCCGTGT 124626 Query 97345 GCGTTCTGGCATC 97357 || || ||||| Sbjct 124627 GCAACCTTGCATC 124639 >seq660 Length=72284 Score = 116 bits (128), Expect = 5e-21 Identities = 177/247 (72%), Gaps = 4/247 (2%) Strand=Plus/Plus Query 70044 TCGGCTTCACCGACAGACAAGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGC 70103 ||||| | || || | |||| ||||| || |||||||| ||||| ||||| ||||||| Sbjct 45895 TCGGCCTTTCCCACCGTGAAGAAGGCGACCTTGGGCCAGTCTACGGGTTCCAATGGAGGC 45954 Query 70104 ACTCGGGCACCAAGTATGTAGACTGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAAT 70163 | | || || |||| |||||| | || |||||| | || || || || ||||| Sbjct 45955 ATTTCGGTGCCGAGTACAAGGACTGCCACACCGACTATACTGGACAAGGAGTGGATCAGC 46014 Query 70164 TG-CAGACAATCATTGACACTCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGC 70222 || | || ||||| ||| ||||||| ||| || || ||| | ||| | |||| Sbjct 46015 TGGCTGAGG-TCATTCACAAGCTCAAGAACAACCCTTACGACAGGCGCATCATCATGTCT 46073 Query 70223 TCATGGAATCCTGCAGATTTGCACCAAATGGCACTACCACCGTGTCAC-TGTTTGGCTCA 70281 | ||||||||||| ||| || | | ||||| | ||||| |||||| ||||| ||||| Sbjct 46074 GCCTGGAATCCTGCGGATATGAAGAAGATGGCTTTGCCACCCTGTCACATGTTT-GCTCA 46132 Query 70282 GTTTTAC 70288 ||| ||| Sbjct 46133 GTTCTAC 46139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741041182998200