Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cercospora_20cf._20sigesbeckiae_20[genbank_20GCA_5F002217505.1_20201
7-07-13] 1,945 sequences; 34,940,764 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq455 84.2 2e-11
seq530 82.4 6e-11
>seq455
Length=1194790
Score = 84.2 bits (92), Expect = 2e-11
Identities = 129/182 (71%), Gaps = 4/182 (2%)
Strand=Plus/Plus
Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582
||| || ||| |||||| || ||||||||||| | || || ||||||| || ||
Sbjct 1131012 ATGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGACAGGGTACGGCCGTCCTCGAGTTG 1131071
Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642
||| || || |||| | ||||||||| ||| || | | ||||||||| ||| ||
Sbjct 1131072 CTTGCCAGCGAAAATGAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTT 1131131
Query 48643 CTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCG 48700
| ||||| | | || ||||| ||| |||||||| ||||| || || || || |||
Sbjct 1131132 CGACTTGACGTTGTCG--ATGGTGTCGCTAGACTCCACCTCGAGGGTGATAGTCTTGCCG 1131189
Query 48701 GT 48702
||
Sbjct 1131190 GT 1131191
>seq530
Length=291
Score = 82.4 bits (90), Expect = 6e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576
||| || || |||||||||||||| || |||||||| || | | | || | |||||
Sbjct 56 CACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGTAGTCTGATAGTGTGCGACCATCCTC 115
Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636
|| |||||| || || | || | |||||||| ||| || | | ||||||||
Sbjct 116 CAACTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCTTG 175
Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696
|| || ||||| | | || || ||| | ||||| ||| | || ||||| ||
Sbjct 176 GATCTTGGACTTGACATTGTCGATAGTGTCGCTCGACTCGACCTCAAGAGTGATGGTCTT 235
Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
|||||||| || || || || ||||||||
Sbjct 236 GCCGGTGAGGGTCTTGACGAAGATCTGCAT 265
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421241214371945
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |