Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercospora_20cf._20sigesbeckiae_20[genbank_20GCA_5F002217505.1_20201 7-07-13] 1,945 sequences; 34,940,764 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq640 104 4e-18 seq581 89.7 8e-14 >seq640 Length=132233 Score = 104 bits (114), Expect = 4e-18 Identities = 85/101 (84%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || || | ||||| | || || |||||||| || ||||||||||||||||| Sbjct 92530 GCCAAGCGCCACCGAAAGATCT-TGCGCGACAACATCCAGGGTATCACCAAGCCAGCTAT 92472 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 ||| ||||| || ||||||||||| ||||||||| |||||| Sbjct 92471 CCGACGTCTCGCACGTCGTGGTGGTGTCAAGCGTATCTCTG 92431 Score = 89.7 bits (98), Expect = 8e-14 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || |||| ||||||| |||| ||| | |||| ||||||| || ||||||| || | Sbjct 92372 TGATCTACGAAGAGACCCGTGGTGTCCTCAAGACCTTCCTCGAGGGTGTTATCCGCGACG 92313 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 | || || || |||||||| || || ||||||||||| || | || | ||||| | Sbjct 92312 CCGTCACATACACTGAGCACGCCAAGCGCAAGACTGTCACATCTCTCGACGTTGTCTACG 92253 Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | || ||||||||||| | |||| ||||| || ||||| Sbjct 92252 CTCTCAAGCGTCAAGGCCGCACCCTTTACGGTTTCGGTGGTTAA 92209 >seq581 Length=602268 Score = 89.7 bits (98), Expect = 8e-14 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 ||| || || ||||| ||||| | |||||||| |||||||| ||||| ||||||||||| Sbjct 25465 TCTGCGCGACAACATTCAAGGTGTAACCAAGCCGGCTATCCGCCGTCTCGCTCGTCGTGG 25524 Query 16513 TGGAGTCAAGCGTGTCTCTGGA 16534 || ||||||||| |||||||| Sbjct 25525 CGGTGTCAAGCGTATCTCTGGA 25546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79073421672885