Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercospora_20cf._20sigesbeckiae_20[genbank_20GCA_5F002217505.1_20201 7-07-13] 1,945 sequences; 34,940,764 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq411 318 2e-81 >seq411 Length=240905 Score = 318 bits (352), Expect = 2e-81 Identities = 1071/1641 (65%), Gaps = 66/1641 (4%) Strand=Plus/Plus Query 363454 CCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCCGCG 363513 || ||||| ||| | |||||||| ||| |||| ||||| || ||| | || ||||| Sbjct 123795 CCACAGCACATGATCATGCGTGTGGCTGTTGGAATCCACGGCGACGATATCGAGGCCGCC 123854 Query 363514 ATTGAAACATATAAGCTTCTAAGT-GCTCGTGTA-TTCACGCACGCCACGCCAACAATGT 363571 ||||| || || || || | | || | | || ||||| ||||| |||| ||| ||| Sbjct 123855 ATTGAGACCTACAA-CTAC-ATGTCGAACAAATACTTCACACACGCTTCGCCTACACTGT 123912 Query 363572 ACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGACG 363631 || ||||| || | ||| ||||| || |||| ||||| | | | |||||||| | Sbjct 123913 TCAGCGCTGGTACGCCGAATGCACAGTTGGCTTCATGCTTCTTGATCGACATGAAGGATG 123972 Query 363632 ATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAG 363691 | ||| |||||||||| |||||||| |||| ||| || | || || |||||||| | Sbjct 123973 ACAGCATTGAGGGTATCTACGACACACTGAAGACTTGCGCCATGATCTCGAAGAATGCTG 124032 Query 363692 GCGGAATTGG--TGTATCGATCCACAATGTTCGTGC-ACAGAA-CAGTTACATTCGCGGC 363747 | || ||||| || | | |||||| | ||||| || | | || |||||| ||| Sbjct 124033 GTGGTATTGGCCTGAACTG--CCACAAGATCCGTGCTACTGGATCA--TACATTGCAGGC 124088 Query 363748 ACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGG 363807 ||| || || ||||| || | || ||| | || || | | || ||||| | Sbjct 124089 ACAAACGGCACATCCAATGGTCTCATCCCGATGTTGCGCGTCTACAATAACACTGCCCGC 124148 Query 363808 TACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCAT 363867 || |||||||| ||||| ||||| || ||||| || || || || ||||| Sbjct 124149 TATGTCGACCAAGGTGGCAACAAGCGTCCTGGCGCGTTCGCCATCTACCTAGAGCCATGG 124208 Query 363868 CATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGT 363927 || || ||| | | || | || ||||| || ||| ||||| |||||| ||||| Sbjct 124209 CACGCAGATGTCATCTCCTTCATGGACCTCCGCAAGAACCACGGAAAGGAGGAAGTGCGT 124268 Query 363928 GCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGT-GGAGGC 363986 |||||||||||||||| || |||||| | | || | || |||||||| || | || | Sbjct 124269 GCACGTGATCTGTTCTTCGCTCTTTGGATCCCAGATCTGTTCATGAAGCGTGTCGAAGCC 124328 Query 363987 AGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGG 364046 | |||| ||| ||||| | ||||| | || || || ||||| | ||||| | || Sbjct 124329 AACGCAGAA-TGGACACTCATGTGCCCCAATGAGTGCCCTGGTCTCGCTGATGTGTACGG 124387 Query 364047 TGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAG----GCTCGTAAGA 364102 |||||| | | | || ||| || || ||| ||| | | ||| ||| Sbjct 124388 TGACGAGTTCGAGGAGCTGTACACCCGCTACGA----GAGAGAAGGTCGTGGACGTGAGA 124443 Query 364103 CAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACAC 364162 | | | ||| || ||| | |||| ||| ||| |||| | |||| |||||| || || Sbjct 124444 CTGTCCGCGCTCAAAAGGTCTGGTATGCTATCTTGGAAGCCCAGACTGAGACTGGTGGAC 124503 Query 364163 CCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAA 364222 | | ||| | ||||| ||| | |||||||||| ||||||| || |||| || || | Sbjct 124504 CTTTCATGCTCTACAAGGATGCTGCCAACCGCAAGAGCAACCAGAAGAACCTCGGAACGA 124563 Query 364223 TTCAGCAGAG---CAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTG 364279 ||| |||| |||| | || || ||||| ||||| |||||||| || |||||| | Sbjct 124564 -TCA--AGAGTTCCAACTTGTGCACTGAGATCATTGAGTACACCGCACCAGACGAGGTCG 124620 Query 364280 CCGTATGTAACCTTGCGTCGATCGCGCT-------TCCGGCG--TTTGTAAAAGATGGT- 364329 |||| || |||||||| || | || || | || || ||| || || || Sbjct 124621 CCGTGTGCAACCTTGCATCTCTTGCTCTGCCAACCTACGTCGATCTTGAGAACGAGCGTT 124680 Query 364330 ---ACTTT-TGA----CCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATC 364381 ||||| || |||| || | | | | ||| ||| | ||||| Sbjct 124681 TCGACTTTGAGAAGCTCCACGAGGTTGTGCAAGTCGTCACCAA-----GAACTTG----- 124730 Query 364382 TCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGC 364441 ||||| | ||||| || | || ||| | ||||| || || || |||| Sbjct 124731 --AACAAGATCATCGAAGTCAACCACTACCCAGTGCCTGAGGCGAAGAAGAGCAACATGC 124788 Query 364442 GTCATCGCCCGATTGGTCTTGGTGTACAG-GGCCTCGCTGACGTTTTTATGATGCTCAA- 364499 | || | || || ||||| ||||| ||| || || ||||| | ||| || |||| | Sbjct 124789 GCCACAGACCAATCGGTCTCGGTGT-CAGCGGTCTTGCTGATGCTTTCCTG--GCTCTAC 124845 Query 364500 -GATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGT 364558 ||| | ||||| || || || || ||| || || ||||||| || || || | Sbjct 124846 GCATGCCTTTTGAGTCTCCAGAGGCCCGTCACCTGAACGTCCAGATCTTCGAGACCATCT 124905 Query 364559 ATTTTGCCGCAATGACTGCTTCGTGTGA-TTTGGCAAAAACCAAGGGAAAGTACTCTACT 364617 | || || | || || ||||| || ||| | || | || | ||| || Sbjct 124906 ACCACGCTGCGCTCACCGCATCGTGCGACCTTGCTAGCAAGCTTGGTCCA-TACGAGACG 124964 Query 364618 TATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCA 364677 || ||||| ||||| |||| |||| || | |||| || | ||| ||||| || Sbjct 124965 TACGAGGGCTCCCCGGTTTCAAAGGGCGAACTTCAGTACGAGATGTGGGGCGTCACACCT 125024 Query 364678 TCTGTCCGATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGCAAC 364737 || | || ||| ||||||| |||| |||| | |||| ||| |||||| Sbjct 125025 TCAGACCTCTGGGACTGGGACGCGCTCAAGGCCAAGATCGCTCAGCACGGTGTCCGCAAC 125084 Query 364738 TCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAG 364797 ||||| | || || ||||| || || || || | |||||| | || ||||||| Sbjct 125085 TCCCTTCTGGTTGCACCAATGCCTACTGCCTCCACATCGCAGATCATGGGCTTCAACGAG 125144 Query 364798 TGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCG 364857 |||||||| || | || ||||| | || || || || || ||| |||||||||| | Sbjct 125145 TGCTTCGAGCCATACACTAGCAACATCTACTCTCGTCGTGTGCTTGCCGGAGAATTCCAA 125204 Query 364858 GTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATG 364917 || || || | | | |||||||| |||||| || ||||| ||| | |||| Sbjct 125205 GTCGTCAACCCATGGTTGCTGAAGGATCTCGTCGACCGTGGATTGTGGTCTGAGAACATG 125264 Query 364918 AAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGAT 364977 |||||| |||||||||| ||||| ||||| |||||| |||| || || Sbjct 125265 AAGAACCGCATCATCGCCGACGGCGGTTCCGTGCAACGCATTCCGAACATTCCGGACGAC 125324 Query 364978 CTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCG 365037 || ||| | | ||||| || || |||||||| ||| | | || | ||||| Sbjct 125325 CTCAAGGCGTTGTACAAGACTGTCTGGGAAATCAGTCAGCGCAACATTGTTCAAATGGCC 125384 Query 365038 GCCGATCGCGGTGCTTTTATC 365058 || || |||||||| || ||| Sbjct 125385 GCGGACCGCGGTGCCTTCATC 125405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303321120020990