Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercospora_20cf._20sigesbeckiae_20[genbank_20GCA_5F002217505.1_20201 7-07-13] 1,945 sequences; 34,940,764 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq680 145 7e-30 seq455 131 2e-25 seq530 120 3e-22 seq653 116 3e-21 seq671 84.2 2e-11 >seq680 Length=821847 Score = 145 bits (160), Expect = 7e-30 Identities = 309/454 (68%), Gaps = 7/454 (2%) Strand=Plus/Plus Query 46144 ACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGT 46203 |||||||| ||| || | |||||||| ||| ||||| |||| || || ||| Sbjct 340699 ACTTTCGCTATGCGATTGATCGCCTTTGCTGCTGTCGAGGGTATCTTCTTCTCCGGCTCA 340758 Query 46204 TTTGCCGCCATCTTTTACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAA 46262 || || ||||||| | | || || | || | ||||| | ||||| || || ||| Sbjct 340759 TTCGCGTCCATCTTCTGGTTGAAGAAGCGTGGTC-TCATGGCTGGCCTCACCTTCTCCAA 340817 Query 46263 CGAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAACAC 46322 |||||| || || || ||||||||| |||| || ||||| || || || || | | | Sbjct 340818 CGAGCTCATCTCCCGTGACGAGGGCATGCACACTGACTTCGCTTGCCTG--CTGTT-CTC 340874 Query 46323 TCGCGTGCACGACAAGCTTGCGCCCGACAC-CGTGCTGAGCATGTTCAAGGAGGCGGTGG 46381 || | | | |||||| || | | | ||||| ||||| || |||||| || | Sbjct 340875 TCACCTCAAGAACAAGCCCGC-CAAGTCGGTCGTGCAAAGCATCATCGTGGAGGCCGTTG 340933 Query 46382 CCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACGCAC 46441 |||||||| | || || || || | || ||||| || ||||| ||||||||||| Sbjct 340934 CCATTGAGCAAGAATTCTTGACCGATGCTCTGCCTTGCGCGCTGCTCGGCATGAACGCTA 340993 Query 46442 AGTCAATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTTCACCAGC 46501 || |||||| | ||||| |||||||| || ||||||||||| | ||| | | | Sbjct 340994 AGCTCATGTGCCAGTACATTGAGTTTGTCGCTGACCGACTGCTGCTCGCTCTTGGCAACC 341053 Query 46502 CGAAGCATTTTCACGCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGAGGGCA 46561 ||| | |||| ||| || || || || ||| | |||||||| || | |||| Sbjct 341054 AAAAGTTCTACAACGCCACCAACCCCTTCGACTTCATGGAGAACATCTCTCTCGGCGGCA 341113 Query 46562 AAACTAATTTTTTCGAAAAGCGCGTCGGCGAGTA 46595 | || || || ||||| ||||| || ||||| || Sbjct 341114 AGACCAACTTCTTCGAGAAGCGTGTTGGCGACTA 341147 >seq455 Length=1194790 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| ||||| || || | ||||| |||||||| |||||||| || Sbjct 1130761 CCACCTCGTAGACGAAGCACCAAGTGGAGAGTCGATTCCTTTTGGATGTTGTAGTCCGAG 1130820 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||| || || |||||||| ||| |||| || |||||||||||||| ||| Sbjct 1130821 AGAGTGCGGCCGTCTTCGAGTTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGTGGG 1130880 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | ||| ||| | ||||||| Sbjct 1130881 ATGCCCTCCTTGTCTTGGATCTTGGACTTGACATTGTCGATAGTGTCGCTCGACTCGACC 1130940 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || ||||| || || || ||||| |||||||| Sbjct 1130941 TCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 1130987 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | ||| | ||| |||||||| || |||||||||||| | Sbjct 1130989 CCACCACGGAGACGGAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGAC 1131048 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || |||||| || |||||||| ||| | || | |||||||||||||||||| Sbjct 1131049 AGGGTACGGCCGTCCTCGAGTTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCCGGAGGA 1131108 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || ||| ||||| | || | || ||| | ||||| | Sbjct 1131109 ATGCCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCGATGGTGTCGCTAGACTCCACC 1131168 Query 131188 TCGACGGTAACGGTTTTACCGGT 131210 |||| ||| | || || ||||| Sbjct 1131169 TCGAGGGTGATAGTCTTGCCGGT 1131191 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||||||||| || || | || |||||| || |||||||| || | Sbjct 1130533 CCTCCACGAAGACGCAGCACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGTAGTC--TG 1130590 Query 131068 ATGGTGCGCGAG--TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 || ||| |||| ||||| | ||||||||| ||| |||| | |||||||||||||| | Sbjct 1130591 ATAGTGTGCGACCATCCTCCAACTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCCGGTG 1130650 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 |||| || || ||||| ||| || ||| | | || | || || | || || | Sbjct 1130651 GGATACCCTCCTTGTCTTGGATCTTGCTCTTCACGTTGTCGATGGTGTCCGATGATTCTA 1130710 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| || || || || || || || ||||| || ||||| Sbjct 1130711 CCTCCAACGTAATCGTCTTGCCTGTGAGTGTCTTGACGAAGATTTGCAT 1130759 >seq530 Length=291 Score = 120 bits (132), Expect = 3e-22 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||||||||| || || | || |||||| || |||||||| || | Sbjct 39 CCTCCACGAAGACGCAGCACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGTAGTC--TG 96 Query 131068 ATGGTGCGCGAG--TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 || ||| |||| ||||| | ||||||||| ||| |||| | |||||||||||||| | Sbjct 97 ATAGTGTGCGACCATCCTCCAACTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCCGGTG 156 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 |||| || || ||||| ||| || ||||| | || | ||| ||| | ||||||| Sbjct 157 GGATGCCCTCCTTGTCTTGGATCTTGGACTTGACATTGTCGATAGTGTCGCTCGACTCGA 216 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || ||||| || || || ||||| |||||||| Sbjct 217 CCTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 265 >seq653 Length=579839 Score = 116 bits (128), Expect = 3e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| || || || || || | ||| |||||||| || |||||||| ||||| Sbjct 344582 CCACCACGCAGGCGGAGGACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTG 344641 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| ||||||||||| ||| |||| || |||||||||||||| ||| Sbjct 344642 AGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGTGGG 344701 Query 131128 ATTCCTTCTTTGTC 131141 ||||| || ||||| Sbjct 344702 ATTCCCTCCTTGTC 344715 >seq671 Length=186828 Score = 84.2 bits (92), Expect = 2e-11 Identities = 127/181 (70%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| || |||||||| ||| || ||||| ||||| | ||||| || ||| ||| Sbjct 53987 CCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAATTGCTTTCCAGCGAAGA 53928 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | ||||||||||||||||| || || || || ||||| ||| || ||||| | | Sbjct 53927 TCAAACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGT 53868 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | ||||| | ||||| | || | ||| | || || ||||| || || || |||| Sbjct 53867 CGATGGTATCCGACGACTCCACCTCAAGGGTGATAGTCTTGCCGGTGAGGGTCTTGACGA 53808 Query 131225 A 131225 | Sbjct 53807 A 53807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472001324188800